Pseudomonas mendocina NK-01, MDS_0176
Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
Sequence Data
| Strain | Pseudomonas mendocina NK-01 chromosome, complete genome. [Details] | |
| DNA Sequence Upstream of Gene |
CAGCACAGCAACGGTGTACTCAGCCGCTTGCGGCCTACCTTGCTGGAGGATCATCCGTTGCCCGGCCCGCCTGGGCGGGGGGCGATCTTTCTGCGTCTGG GGGAAGGCGAGCAGGCGCTGGGTGTGGTGATGATGCATCTGGCGCTTGGCGCCCGTACCCGTACTCGGCAGCTGGCTTACATCCGCGAGCGGGTCAGTGA GTTTCGCCATCTGGTGCTGATGGGGGACATGAATACCCATGCCGTCGACCTGTTGGAAAACTCCCCATTGCGCGACCTTGGCCTGCTCGCACCGCAGGTC GAGGCGACTTTCCCCAGCTGGCGCCCGCAGCGCTGTCTCGACCATATCCTGCTCAGCTCGGAGCTTGAACTGGGGCGTGTCGACGTGCTCAGCCAGCCTA TTTCCGACCACCTTCCCGTAGCCGTGGAAATCCGCTTGCCGGAAGCACAGAATGGCGCGCAAATGCCTATGCTGAAGACGCCATCTCCCGAGTAAGCCGT
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| DNA Sequence for Gene |
>MDS_0176
ATGAGCGATGACGCGCGACGTTGGAAAGACAAATACCTGAGCAGCCTGGAACAACAGGAAAAGCTTGAACGCCGTTGGGAGTCACGCCTGGATCTGCTGC GCCGTGGCCTGGTGCGCAGCAGTCTGGCTGCCGAGGGCACGGACAAGGCGGTCGATCAGTGCATGCAGGAGATGCGCGAGATTCTCCGCCGCGACGACAT CGACGCTGCGCTGGGTGGCCTGATTCCACGCCTGGAAAAGGCTGTGCTGGATTCCGAGCAGCGCCGTCAGCAGCGCGCCGGCGAGGCCGCCACGGCATTG GCGGGCCTGATCGAACAGCTGCAACGTCTGCAGCCGCCGCGTGAGGTACGCAAGGCACTCAAGTCACTCGGCAAGCAACTGCAGGACGCCACCAGCCACC AGTATCTGTTGCCCGCATTGCTCAGCCAACTGAGCAACCTGCAAGGGCAGGCGCTGACCGTTCTGCAAGCCCCGGTGCAGGAGCAACCCGGCTTGCTGCA GCGCCTCTTCGGCTCGCGGGGTGAAAGTAGCGAAGAGACCGCCAAAGCTGGTCCTGCACCTGCACCTGCACCTGCACCTGCACCTATATCTGAGCCTGAG GTTGAGCCTGCCACTGTCTCCGAGAGTGCAGAGCGCACGCCAGAGGTCCTCATGCCTGCGAGCGAGCCAGCGGCTGTTGCCAGCTTGGCAAAGAGAAAGC ATCAGGCCAACGACGCCGCGCCCATGCTCGACAGCCTGCCACTGCCGCCTGGCCTGGTGTCGCCGGAGGATGCAGGCGACAGCCCGTTCTCCCTGCCCAG CAGCGAACCCGGATACAGCGCGGTGGCCCCGCATATCGCCAGCAGCTTGCGCAGCCTGCTCGACGAGCTGGAGTTGCCGGCACGTCATCAGCCGCAAGGC GATGCGCTGCGCCAGCGTCTGGAGGGCAACCTCAACTGGTACGAACTGGTACCCGTGCTGGACGATCTGGCTGTGCTGGTATTGGCAGTCACCGACAGTG GCCAGCGTGAGTTCGCCGGTTATCTCAAGCAGCTCAACGAGCGCCTGGCCGCCTTTATCAGCACCCTCAGTGAAGCGCATGAGGGTTATACCGCCTCGGT GGAAAGCACGCGCCACTTCAACCAGCAGTTGCGCGATCAGGTCAGCGACTTGCAGAACAGCGTGCAGGAGGCGGCCGATCTGGACGCGCTCAAGCAGGCG CTGGAGCAGCGTCTGGAGGGCCTGCTGCAGAGCGTCAGCAATCATCAGCGTCAGCGCGACAGTGGTGAGGATGACGTGGCGGAACGGCTGCAGGGCCTGG TCAAGCGTGTCGCTGAAATGGAGCTCGAGGCGCAGCAGTTTCGCCAACATATCGAGGAGCAGCGGCAGAAATCGCTGCTCGACCCTCTGACCGGCTTGCC CAATCGCGCGGCCTGGAGCGAGCGCCTCGACCTGGAGATTGCCCGACGCCAGCGCTATGGCGGCCAGTTGCTGATGGCGGTGCTGGATATCGACCACTTC AAGCGGATCAACGATGGCTACGGTCACCTGGCAGGGGATCGAGTGCTGAAGATCATTGCCGGTGAACTGCACAAACGTCTGCGCAAGACCGATTTCATTG CCCGCTTCGGTGGCGAGGAGTTCGTTCTGCTGATTCCAGGCACGCCGCTTGATGGAGGCGTGCAATTGCTGGAAACCCTGCGTGCAGCGGTCGAAGCCTG CCCGTTCCACTTCAAGGGCGAGCCAGTGACCATCACTCTTTCCGCCGGCATTGCAGAGTTTCGCAATGACGAGGCCACCGAGGATACCTTCGAGCGCGCC GATCAGGCGCTATATCGAGCCAAGGGTGCTGGGCGCAACCGCGTTGAACAGGCCTGA
BLASTN Search
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DIAMOND BLASTX Search (DIAMOND is faster than BLASTX)
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| DNA Sequence Downstream of Gene |
GTCGGCGTAAATCCAGCCGCGGCTGTCCCACCCATGTCAGGAGGTAACCTCTTCGCGCTCCTCGTCGACAGAGGTGGCGGTGTGTGCCCGTGGCGTGTGG TCGTCGTCATCCTGCAGCGGCACTTCATTGCCCTGCGCGTCGTACAGCTTGCCGCCGATGAAATGGTCGCCTTCGTGCAGGGCGGCGATGTCGCGATAGC GCAGGCTGCGCTCGGTACCTGCCACGAACACCGACTGCTGGTCCGAGTTGCCGGTGGTGAAATGGTTGAACAGCAGGTTGAGCAGGATCGCCATGATCGC CGCCGAGCTGATACCGGAGTGGAAGATGGTTTCGAACCAGGCCGGGAAATGGTGATAGAAGCTGGGCATGGCAATGGGGATCATGCCGAAACCGATGGAG GTGGCGACGATTACCAGATTCATGTTGTTGCGGTAATCCACCTTGGCCAGGGTGCGGATGCCGCTGGCCGCGACCGTACCGAACAGCACGATGCCGGCGC
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| Amino Acid Sequence |
>diguanylate cyclase
MSDDARRWKDKYLSSLEQQEKLERRWESRLDLLRRGLVRSSLAAEGTDKAVDQCMQEMREILRRDDIDAALGGLIPRLEKAVLDSEQRRQQRAGEAATAL AGLIEQLQRLQPPREVRKALKSLGKQLQDATSHQYLLPALLSQLSNLQGQALTVLQAPVQEQPGLLQRLFGSRGESSEETAKAGPAPAPAPAPAPISEPE VEPATVSESAERTPEVLMPASEPAAVASLAKRKHQANDAAPMLDSLPLPPGLVSPEDAGDSPFSLPSSEPGYSAVAPHIASSLRSLLDELELPARHQPQG DALRQRLEGNLNWYELVPVLDDLAVLVLAVTDSGQREFAGYLKQLNERLAAFISTLSEAHEGYTASVESTRHFNQQLRDQVSDLQNSVQEAADLDALKQA LEQRLEGLLQSVSNHQRQRDSGEDDVAERLQGLVKRVAEMELEAQQFRQHIEEQRQKSLLDPLTGLPNRAAWSERLDLEIARRQRYGGQLLMAVLDIDHF KRINDGYGHLAGDRVLKIIAGELHKRLRKTDFIARFGGEEFVLLIPGTPLDGGVQLLETLRAAVEACPFHFKGEPVTITLSAGIAEFRNDEATEDTFERA DQALYRAKGAGRNRVEQA
BLASTP |
DIAMOND BLASTP (DIAMOND is faster than BLASTP)
Search for conserved domains in this protein at NCBI CDD site
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