Pseudomonas mendocina NK-01, MDS_0016
Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
Sequence Data
| Strain | Pseudomonas mendocina NK-01 chromosome, complete genome. [Details] | |
| DNA Sequence Upstream of Gene |
CTGCTGGGCCTGGTGCTGGCAGGGCTGGGCAGCGGCTGTAGCAAGGATGCGATGGACGGCAGCGCCGCCACGCAAGAATCGACCAGCGTCGTGCTGCAGC TGCAGGCAGGCGATGAGCTGAACCCTACCGTCGAAGGCTACAGCGCCCCGGTGCGTGTGCGCCTGCTGGAGCTGCGCAGCGCCGCCGCATTCAGCCGGAC CGACTACTTCAGCCTCGCCGAGCGCGCGGCTGCGACCCTGGGCGGCGAGCTGGTGGCCGAGGACGAATGGCTGGTCCATCCCGGCCAGACCCGGGAACTG AAACGCACGCTCGCCCCGGAAACGCGTCATCTCGGCCTGCTGGTCGGCTACCGCGAAATTGACCGGGCGCAGTGGCGCGTGGTCCTGGAGCCGAAGCAGG GCACCCGCAGCCATTACCGCATCGACCTCGGGACCCACGCCGCCAGCGCCGCTGAGCTCGCCGCGCCGTCCCGCCTCGACTCTCGCTAACAGGAGCCTGT
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| DNA Sequence for Gene |
>MDS_0016
ATGTCCTGGAACAACCGTGTGATCTGGTCCGAAGGCATGTTCATCGGCACCCAGCATTTCCAGCAACATGATCGCTACCTGGAGGCTCTGATCGATGCCC GCAGCCGCCCACTGTCAGCCGCCGGCTGGGGTTTCGCCGAGCTGCAGCTGGATATCGGCCTGCTGGCACAGGGCAAGCTGGCCATCGTCAGCGCCCGTGG CCTGTTGCCTGACGGCACGCCGTTCAACATTCCCCAGGATGACGTGGCGCCGGAGCCGCTGGATATCCCCGACGACCTGCGCGACGGCGTGATCTATCTG GCCCTGCCGCTGCGCCGGGCGGGTGTGCGAGACACCGTCGAAGCGGGTGAAGCACTGGGCGGCGCGCGCTATCGCGGCCAGGTCCGCGAAGTGCGCGACG ACAACGCAGCCTTCGAAAGCCGTGTGCCGGTGATGGTTGGCGAACGCGCCCTGCGCCTGTTGACCGCCGCCGATGGCCTGCAGGAATACGCCGTGTTGGG CGTAGCGCGCGTGCGCGAGAAACGCGCCGACCGCGCCCTGGTGCTGGACGAACAGTACATCCCGCCGCTGCTCGACGTAGCAGCCAGCGCGCCACTGGCT GCCTTTCGCGGCGAGCTGCTGGGCTTGCTGCATCAGCGCGGCGAAGCCCTGGCCGGGCGCGTGGTGGCCTCCAGCGCTGGCGGCGCCTCGGAAATCGCCG ACTTCATGCTGCTGCAACTGGTCAACCGCGCGCAGCCGCTGTTCGCCCACCTGGCGCAGATGCAGCCCCTGCACCCGGAGCGCCTGTACAGCGAATTGCT GGCTCTGGCCGGCGAGTTCGCCACCTTCTCCAACGCCGCGCGCCGGCCGCTGGAGTTCCCGCCCTACATCCACGATGACCTGCAGGCCAGCTTCACTCCG GTGATGCAGGCACTGCGTGAAGCCTTGTCGATGCTGATCGACAGCAAGGCCGTAGCCATTCCCATCGTCGAGAAGGCCTACGGCGTGCACGTGGCCATGC TGGCTGACCGCAGCCTGCTGGACAGTGCCAGCTTCATCCTCGTGGTCCGCGCCGACATGCCTGCCGAGACCCTGCGCGGGCGCTTCGGCCAGCAGAGCAA GATCGGCTCGGTGGAGCACATCCGCGATCTGGTCAACCTGCAGCTACCGGGCATCAACCTGCTGCCGCTGCCGGTGGCCCCACGGCAGATTCCGTTCCAC GCCGGCTCGACCTACTACGAGCTCGACCGTGGCAGCGAACACTGGAAGCAGCTGGCGCACTCCGGCGGCTTCGCTTTCCACGTGGCGGGCGAATACCCCG GCCTGAACCTGGCCTTCTGGGCGATACGGGGCTAA
BLASTN Search
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DIAMOND BLASTX Search (DIAMOND is faster than BLASTX)
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| DNA Sequence Downstream of Gene |
TCCATGACCGATCAAGACGACTGGCTGAACAAGCCGCCAGCAGCGCAACCGGCGAACAACGATCGCACCCAGTTCATGCCGCGCCCGGGTGGTCGTGCTC CGCAGGCCCCAGCAGAGGCCCCGGCAGCACCGCTGCAGATGCCGGCAGCGCCACTACCGGCGGGCCAGGCCCGCGGCATGAATCCGCTGGAGCAGGCCGC CGGGCCGCTGCTGAGCATGCTCACCCGATTGCGCAGCACCTTGGCCCATCCCGCTCCAGCCAGCCTGCGCGCGCAGCTGCTGGGTTACCTGCGCCAGTTC GAACAGCGCGCCGAGGCCGCCGGTGTGCCGCGCAACGACGTGTTGCTGGCGCGCTATGCGCTGTGCACCGCCCTCGACGAGGCGGTGCTGAGCACGCCCT GGGGCAGCACCAGCGAGTGGGGCAAGCAAAGCCTGCTGATCACCGTGCACAACGAGGCCTGGGGCGGCGAGAAGGTGTTCCAGCTGCTCGAACACTGCCT
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| Amino Acid Sequence |
>hypothetical protein
MSWNNRVIWSEGMFIGTQHFQQHDRYLEALIDARSRPLSAAGWGFAELQLDIGLLAQGKLAIVSARGLLPDGTPFNIPQDDVAPEPLDIPDDLRDGVIYL ALPLRRAGVRDTVEAGEALGGARYRGQVREVRDDNAAFESRVPVMVGERALRLLTAADGLQEYAVLGVARVREKRADRALVLDEQYIPPLLDVAASAPLA AFRGELLGLLHQRGEALAGRVVASSAGGASEIADFMLLQLVNRAQPLFAHLAQMQPLHPERLYSELLALAGEFATFSNAARRPLEFPPYIHDDLQASFTP VMQALREALSMLIDSKAVAIPIVEKAYGVHVAMLADRSLLDSASFILVVRADMPAETLRGRFGQQSKIGSVEHIRDLVNLQLPGINLLPLPVAPRQIPFH AGSTYYELDRGSEHWKQLAHSGGFAFHVAGEYPGLNLAFWAIRG
BLASTP |
DIAMOND BLASTP (DIAMOND is faster than BLASTP)
Search for conserved domains in this protein at NCBI CDD site
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