Pseudomonas stutzeri RCH2, Psest_4218

Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown

Sequence Data

Strain Pseudomonas stutzeri RCH2 chromosome, complete genome. [Details]
DNA Sequence Upstream of Gene
ACGAAATTTTTCGTCCGCGTTGAACTTTCTCTGCAACGATTCGGTCAGAGCATGCGAAGGGTGTAAAAGCCCTTCGATGCTCCTTGTTGTGTTAAGTGTT GGCAGATCTCTGGACCCCGCCCTAGCGGTCCGGATTTGGACCTCGAACTTCCCCCTCCCCCAATGAAGTTCGAGGTTTTTTTTGCCTGCAGAAAAGTGGC GTGGACGCCGCGGCAGCGACAATGACCTGCGCAGTTTCTTGCGCAGGCCTTCTGTGGATAACCTTGTGGGTAAGCTGTTCGCAGTGCGATCAGCCGCGCG TTGCGGCAGTGTTGCGCAACTTGTTGCCGCGGCTGCGCAGGAACTTGCGCAGCTTTCTGTGTTAGCGATCACTTCTGCTAGTCGGGCTGCATGCTGTTAA TTTCATATCTATTTGAAAAATAAGAGGTTTTGTTATCTGGCACGCTGCTTGTTGTTATGAGATGGCCATTCGGCACTCATATCAGACAAGGAGAGCACCC
DNA Sequence for Gene
>Psest_4218
ATGCCAACACCCGCGTATCTGTCCCTCGAAGGCACCAAGCAAGGCCTGATCACCGCCGGCACCTTCACCGAGGACTCGGTTGGCAACATCTTCCAGGAAG GCCATGAGGACCAGATCCTGGTGCAGGCCTTCCAGCATCAGGTCATCATTCCGCGTGACCCGCAGTCTGGCCAGCCGACAGGCCAGCGCGTGCACAAGCC ACTGATGATTACCAAGGTGTTCGACAAGTCGTCGCCGCTGATCTTCAACGCCCTGACTTCCGGCGAGCGCCTGAACAAGTGCCGTCTGGAGTGGTACCGC ACCTCGTCCACCGGCACCCAGGAACACTACTTCACCATCGAGCTGGAAGATGCGGTGATCGTCGACGTGCAGTCGCGCATGCCCAACTGCCAGGACCCGA ACATGTCCCACTTCACCCATCTGGAAGACGTGTACTTCACCTACCGCAAGATCGTTTGGACCCACGAGGTTTCCGGCACCTCCGGCTCCGACGACTGGCG CACCCCTATCGCCGGCTGA
BLASTN Search  |  DIAMOND BLASTX Search (DIAMOND is faster than BLASTX)
DNA Sequence Downstream of Gene
TTCGCCGCGGTCCCGCTTCGGCCAGGCTCGCCTGGCCGAACGCTTTTTTGCGAAGCACTGAACAGATTGCGCCATCGTCGCTCGGGAATGCGCGAACCAT GCCTTCTAGAGCGGCCGGCCTGTGTTACACGGGGCTCCGCAAGCGCCCATGCGCTGATACATGGACTGAACAGGAGGAACATGGATGTTCGCCCCAGCCA ACCAGGCCCACTTCACGCTTTCCCTCGAAGGCATCGAGCACGACTTCAAGGTGCTCGAACTCCAGGGCCGCGAGGCTATCAGCCAGCCCTATCGCTTCGA CCTGGAACTGGTCAGCGAGCGCTCCGACCTGGATCTGGAAAGCCTCCTGCATCGCCCGGCCTTCCTCGCCTTGGCGCCGGTCGGCAGCGGCATCCACGGG CTGGTGCATCAGGCGGCCCAGGGTGAATCCGGTCAACGCCTGACCCGCTATCGGCTCACGCTGGTGCCGCAACTGGCCTACCTCGCCCATCGCATCAACC
Amino Acid Sequence
>type VI secretion system effector
MPTPAYLSLEGTKQGLITAGTFTEDSVGNIFQEGHEDQILVQAFQHQVIIPRDPQSGQPTGQRVHKPLMITKVFDKSSPLIFNALTSGERLNKCRLEWYR TSSTGTQEHYFTIELEDAVIVDVQSRMPNCQDPNMSHFTHLEDVYFTYRKIVWTHEVSGTSGSDDWRTPIAG
BLASTP | DIAMOND BLASTP (DIAMOND is faster than BLASTP)
Search for conserved domains in this protein at NCBI CDD site