Pseudomonas stutzeri RCH2, Psest_3883

Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown

Gene Ontology

Ontology Accession Term GO Evidence Evidence Ontology (ECO) Code Reference Comments
Molecular Function GO:0003677 DNA binding
ISM
Inferred from Sequence Model
Term mapped from: InterPro:PF00486
 ECO:0000259
match to InterPro signature evidence used in automatic assertion
Biological Process GO:0006355 regulation of transcription, DNA-templated
ISM
Inferred from Sequence Model
Term mapped from: InterPro:PF00486
 ECO:0000259
match to InterPro signature evidence used in automatic assertion
Biological Process GO:0000160 phosphorelay signal transduction system
ISM
Inferred from Sequence Model
Term mapped from: InterPro:PF00486
 ECO:0000259
match to InterPro signature evidence used in automatic assertion

Functional Classifications Manually Assigned by PseudoCAP

Pathways

Database Xref Pathway Version Evidence PMID
KEGG psh01503 Cationic antimicrobial peptide (CAMP) resistance 81.0+/01-23, Jan 17 ECO:0000249
sequence similarity evidence used in automatic assertion
KEGG psh02020 Two-component system 81.0+/01-23, Jan 17 ECO:0000249
sequence similarity evidence used in automatic assertion

Functional Predictions from Interpro

Analysis Accession Description Interpro Accession Interpro Description Amino Acid Start Amino Acid Stop E-value
SUPERFAMILY SSF52172 CheY-like IPR011006 CheY-like superfamily 1 178 1.81E-38
SMART SM00448 REC_2 IPR001789 Signal transduction response regulator, receiver domain 1 112 4.8E-39
Gene3D G3DSA:6.10.250.690 - - - 81 117 3.4E-16
Gene3D G3DSA:1.10.10.10 - IPR036388 Winged helix-like DNA-binding domain superfamily 118 223 4.4E-28
Pfam PF00486 Transcriptional regulatory protein, C terminal IPR001867 OmpR/PhoB-type DNA-binding domain 145 220 1.7E-22
PANTHER PTHR48111 REGULATOR OF RPOS IPR039420 Transcriptional regulatory protein WalR-like 1 219 1.1E-54
Pfam PF00072 Response regulator receiver domain IPR001789 Signal transduction response regulator, receiver domain 3 112 5.4E-26
SMART SM00862 Trans_reg_C_3 IPR001867 OmpR/PhoB-type DNA-binding domain 145 220 2.6E-24
Gene3D G3DSA:3.40.50.2300 - - - 1 80 6.9E-15
FunFam G3DSA:3.40.50.2300:FF:000002 DNA-binding response regulator PhoP - - 1 80 9.3E-26
CDD cd00383 trans_reg_C IPR001867 OmpR/PhoB-type DNA-binding domain 132 220 4.88216E-32
FunFam G3DSA:1.10.10.10:FF:000005 Two-component system response regulator - - 122 222 1.7E-28

Search for additional functional domains at the NCBI CDD database website. Go to this protein's amino acid sequence and follow the link.