Pseudomonas stutzeri RCH2, Psest_2014
Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
Sequence Data
| Strain | Pseudomonas stutzeri RCH2 chromosome, complete genome. [Details] | |
| DNA Sequence Upstream of Gene |
CGATGTCCTGGACTGATAGCGGCCCCTTCTGCGCGACCCCAACGCGAGAATGTAGTGCCGCAAAAAAAACACTACAAAACGATTGACGATGCCTTTTCAG CGGAGCATTATTGCCCCGCTCCCGCTAACCAGGGGCCCTGGCAAGGGTCTCCGGGGCGTGCTCAAGCCAACCAGCCGAGCCGTTCCGTGACTGTACTGCC CACAAGGCGGACTGACGAGGTTGCGACTGGAACGAGTCGTCCTGAGGGACGGGGTAGCGATTGACGCATCAGCCAGACTGACCGCTTCTCGTTGTTGTAG CGCACACGGCAGCCACGCCGGCTGTGGGCGCAGCAACCGGAACCAGCCCGGCGATCGGATCCACCCTTCTCTTGGTTCAATCCTCGTCCCAGTCGATATT TCGACGCTCTGCCGCGTGTTGCCCGCAATGATCAGCGATAGCACGTAGGTTTCGGTGGGAAAAGTCGGTGCTCAACCACACTTATTTTGAAGGATTGAAC
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| DNA Sequence for Gene |
>Psest_2014
ATGTCCGCATATCAAGACGACATCAAGGCAGTTGCCGCCCTGAAAGAGCAATACGGCAGCAGCTGGGCCGCTATCAACCCTGAGTCCGTCGCTCGCATGC GCGCCCAGAACCGCTTCAAGACCGGTCTGGAAATTGCTCAGTACACCGCCGACATCATGCGCAAGGACATGGCCGAGTACGACGCCGACTCGTCCGTCTA CACGCAGTCCCTCGGCTGCTGGCACGGCTTCATTGGTCAGCAGAAGCTGATCTCCATCAAGAAGCACCTGAAGACCACCAACAAGCGCTACCTCTACCTG TCCGGCTGGATGGTTGCTGCCCTGCGTTCCGAGTTCGGCCCGCTGCCGGACCAGTCCATGCACGAGAAGACCGCCGTTTCCGACCTGATCGAGGAGCTGT ACACCTTCCTGCGTCAGGCTGACAGCCGCGAACTGGACCTGCTCTTCACCGCCCTGGATGCTGCTCGTGAAGCTGGCGACAACGCCAAGGCTGCCGAGAT CCAGAATCAGATCGACAACTACGAAACCCACATCGTACCGATCATCGCCGACATCGATGCTGGCTTCGGTAACCCGGAAGCCACCTACCTGCTGGCCAAG CGCATGATCGAAGCTGGTGCGTGCTGCATCCAGATCGAAAACCAGGTATCCGACGAGAAGCAGTGCGGCCACCAGGACGGTAAAGTGACCGTTCCGCACG CCGACTTCCTCGCCAAGATCGCCGCCGTTCGCTACGCCTTCCTTGAGCTGGGCATCGACAACGGCGTGATCGTTGCGCGTACCGACTCCCTGGGTGCCGG CCTGACCAAGCAGATCGCTGTGACCAAAGAGCCGGGCGACCTGGGCGACCTGTACAACTCCTTCCTGGATTGCGAAGAAGTTTCCGAAGCCGCTCTGGGC AACGGCGACGTCGTCATCAAGCGCGAAGGCAAGCTGCTGCGTCCGAAGCGTCTGCCGTCCAACCTGTTCCAGTTCCGTGCTGGCACCGGTGAAGCGCGCT GCATACTGGACTGCATCACCTCGCTGCAGAACGGTGCTGACCTGCTGTGGATCGAAACCGAGAAGCCGCACGTTGGCCAGATCGCAGCCATGGTCGACGA AATCCGCAAGACCATCCCGAACGCCAAGCTGGTCTACAACAACAGCCCGTCGTTCAACTGGACTCTGAACTTCCGCCAGCAGGTGTTCGACGCATTCGTA GCCGAAGGCAAGGACGTTTCTGCTTACGACCGCGCCAAGCTGATGAGCGTCGAGTACGACGAAACCGAACTGGCCCAGGTTGCAGACGAGAAGATCCGTA CCTTCCAGCGTGACGGTTCGGCTCACGCCGGCATCTTCCACCACCTGATCACCCTGCCGACCTACCACACCGCCGCGCTGTCGACCGACAACCTGGCCAA GGGCTACTTCGCCGACCAGGGCATGCTGGCCTACGTGAAGGGCGTTCAGCGTCAGGAACTGCGTCAGGGTATCGCCTGCGTCAAGCACCAGAACATGGCT GGTTCCGACATCGGCGACAACCACAAGGAGTACTTCGCTGGCGAAGCTGCTCTGAAGGCAAGCGGTAAAGACAACACCATGAACCAGTTCCACTAA
BLASTN Search
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DIAMOND BLASTX Search (DIAMOND is faster than BLASTX)
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| DNA Sequence Downstream of Gene |
GAACAGGTTCGCAGCTTCCAAAGCTGCGGTGTAGTGAAAAAGCCCCGGCACCTGTGCCGGGGCTTTTTTTTTCACAGCAGAAACGTTACATGCGCCTGCT CTTCGTCGGCCAAACGCACTACTGTCATTCTCTTGTCGCATATGCAATTTAGCGTCATGGCTCCGACAACAAATCGTTATGGAGCTGCGCCGTGATTACT GAGAACAAAGACATTCTGTTCGGCAACGGGGACGAGTTGCCCAGTAACCATTCAACGAATCCGCATATCCAGGAGGTGATCTCGATTGGTCGCCGCAAAG TACTCGCTGGCGGCGCAGCAATGGGCGCCTTGGCGTTTCTTGGCGCGTCGCTTCCCGGACTCGTACAAGCAGCCGAGCCTACGGCCCGGGAACTCAAGGA TATTCCGTTCAAGCGCCGTACGCGCCTGCCCTTCACCCCGGTTGCAGTTACTCGCGCAGATGCCATCACGGTACCGGCCGGGTACTCCGCGACAACCTTC
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| Amino Acid Sequence |
>isocitrate lyase
MSAYQDDIKAVAALKEQYGSSWAAINPESVARMRAQNRFKTGLEIAQYTADIMRKDMAEYDADSSVYTQSLGCWHGFIGQQKLISIKKHLKTTNKRYLYL SGWMVAALRSEFGPLPDQSMHEKTAVSDLIEELYTFLRQADSRELDLLFTALDAAREAGDNAKAAEIQNQIDNYETHIVPIIADIDAGFGNPEATYLLAK RMIEAGACCIQIENQVSDEKQCGHQDGKVTVPHADFLAKIAAVRYAFLELGIDNGVIVARTDSLGAGLTKQIAVTKEPGDLGDLYNSFLDCEEVSEAALG NGDVVIKREGKLLRPKRLPSNLFQFRAGTGEARCILDCITSLQNGADLLWIETEKPHVGQIAAMVDEIRKTIPNAKLVYNNSPSFNWTLNFRQQVFDAFV AEGKDVSAYDRAKLMSVEYDETELAQVADEKIRTFQRDGSAHAGIFHHLITLPTYHTAALSTDNLAKGYFADQGMLAYVKGVQRQELRQGIACVKHQNMA GSDIGDNHKEYFAGEAALKASGKDNTMNQFH
BLASTP |
DIAMOND BLASTP (DIAMOND is faster than BLASTP)
Search for conserved domains in this protein at NCBI CDD site
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