Strain | Pseudomonas stutzeri RCH2 chromosome, complete genome. [Details] | |
DNA Sequence Upstream of Gene |
CATCTCGCCGACCGTTATCGAGAGCTGGCTCGCCAGGTTCATCCGGATCGCTTCGCCGATGCTGGTGAAAGCGAGCAGCGCCAAGCGCTGGAGCGGTCCG CCAACCTCAATGAGGCTTACCAGACACTCAAGAGCCCCAGCCGACGCGCGCGCTATCTGCTGGCGATCGAAGGGCATGAAGTGCCGCTGGAAGCTACTGT GCAGGACCCTGCTTTCCTGATGCAGCAGATGCATTGGCGCGAGGAGCTCGAGGAGCTTCACGAGCAGGCCGACCTCGCCGGCGTGGCGGCATTCAAGTCA CGGTTGAAGCAGGCGCAGCAAGGTCTTAATGATGACTTTGCTCAGATCTGGCGAGACCCGGCGCGGCGCGCCGACGCAGAACGCTTGGTTCGACGCATGC AGTTTCTCGACAAGCTGACCCAGGAAGTGCGCCAACTCGAAGAGCGCCTCGACGATTAACCCCGCGCAGCGCCGAGCGTTGCGCCCGATATCAGACAGAC
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DNA Sequence for Gene |
>Psest_1255
ATGGCCTTACTTCAGATTGCTGAGCCCGGACAAAGCCCACAGCCTCATCAGCGGCGCCTGGCTGTCGGAATAGACCTGGGTACCACAAATTCTCTTGTGG CTGCCCTGCGCAGTGGCGTTACTGCGCCCCTGGCGGATGCCGATGGGCAGGTGATCCTGCCATCGGTGGTGCGTTACCACGCGGATCACGTTGAGGTTGG TGCACAAGCCAAGCTTGCTGCGGCGACCGATCCGTTCAATACCATCAGTTCCGTTAAGCGGTTGATGGGGCGCGGGCTCGCCGATGTGAAGCAGATGGGC GAGCAGTTGCCGTACCGCTTCCGTCAGGCTGAATCGCAGATGCCTTTCATCGAGACGGTTCAGGGTGCCAAGAGCCCGGTGGAAGTCTCTGCTGAAATTC TTCGCGCACTACGTCTGCGTGCCGAGGAGAGCCTGGGTGGCGAGCTGGTCGGGGCGGTGATCACCGTTCCTGCCTATTTTGACGATGCGCAGCGTCAGGC AACCAAGGATGCCGCACGGCTTGCGGGGCTCAACGTCCTTCGTCTGCTCAACGAACCCACCGCGGCGGCCGTTGCTTATGGCCTGGATCGTCAGGCCGAA GGCGTCGTTGCTATTTACGATCTGGGTGGCGGAACCTTCGATATTTCAATTCTTCGCCTGACCAAAGGCGTGTTCGAAGTGCTGGCCACTGGCGGCGATA CTGCGTTGGGCGGCGACGACTTCGACCATACCGTGGCTGACTGGATTCTCGAGTGTGCCGGCGTGTCCGGCGACCTCGAGCCGGGTGCGCAGCGGGAATT GCTGAAGATTGCCTGTGATGCCAAAGAGCGTCTCACTGACGTCGACGTAGTGACTGTTGCCTATGCCGGCTGGTCCGGTGAACTGCATCGAGAGACCTTC GACGCGCTGATCGAACCGATGATTGCGCGCAGTCTGAAATCCTGCCGGCGTGCCGTGCGCGACTCCGGCGTGGAGCTGGAGGAGATCACCGCGGTGGTGA TGGTCGGTGGCTCGACTCGCGTGCCGAAAGTGCGTTCTGCAGTCGGACAGTTATTTGGTCGTGAGCCGCTGACTGATATCGATCCTGACGAGGTCGTGGC GATCGGTGCAGCGATTCAGGCCGAAACGCTGGCCGGAAACAATCGCGACGGAGAAGAGCTGCTGTTGCTCGATGTGATTCCGTTGTCGCTCGGTCTGGAG ACCATGGGTGGGCTGATGGAGAAGATCATCCCGCGCAATACGACGATTCCGGTCGCCCGGGCGCAGGACTTCACCACCTATAAAGATGGCCAGTCGGCCA TGATGATTCATGTCCTCCAAGGCGAGCGTGAACTGATTTCCGATTGCCGCTCTCTGGCGCGCTTCGAGCTGCGCGGCATTCCGCCGATGGTCGCGGGGGC GGCGAAGATTCGCGTTACCTTCCAGGTCGATGCAGACGGTTTGCTCAGCGTATCGGCGCGCGAACTGGCATCCGGCGTCGAGGCCAGTATCCAGGTCAAG CCGTCTTACGGCCTCACTGATGGCGAGATCGCGCGCATGCTCGAGGACTCCTTCCGCAAGGCGGACGAGGATCGCGATGCGCGCGCGCTGCGTGAGCAGC TGGTCGATGCGCAGCGTTTGCTGGAAGCGGTCGAGGCAGCGTTGGCGGCTGATGGCGAGCGCCTGCTGTCTGCCGAAGAGCGGCTTGCTATTGACTCCCA GATGGCCGGATTGCGCGGGCTGCTGGACAGCCAGGATGCGGTCGCCATCGAGCGGCAGACCAAACGCCTTAGCCAGATTACCGACGCCTTTGCCGCGCGT CGCCTGGACTCCACCGTCAAGGCCGCGCTGGCCGGGCGGCGGCTCAACGATATCGAGGATTGA
BLASTN Search
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DIAMOND BLASTX Search (DIAMOND is faster than BLASTX)
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DNA Sequence Downstream of Gene |
CCCAGATGCCGCAGATCATTTTCCTGCCTAACGCCGATCATTGCCCGGAAGGTGCCGTTATCGAGGCGCAGACGGGTGAGACGGTACTGGATGCCGCGCT GCGTAACGGCATCGACATCGAGCATGCTTGCGAAAAGTCCTGTGCGTGCACAACCTGTCACGTGGTGGTGCGCGAAGGCTTCCAGTCGCTTGAGGTCTCT GACGAGCTGGAGGACGACATGCTCGACAAGGCTTGGGGGCTGGAGCCTAATTCGCGCTTGTCCTGCCAAGCGGTGGTGGCTGATGCCGATCTCGTCGTCG AAATACCGAAGTACACCATCAATCAGGTTTCCGAAGGGCATTAAGGGGCGAGCGTGATGCAGCTTAAATGGAGTGATGTGCTGGAGATCGCCATCGAGCT GGCCGAGCGCAAGCCCGGTGTCGATCCGCGCTATGTGAATTTCGTCGATCTGCACCGTTGGGTGATCGAATTGCCTGACTTTTCTGACGAACCCAATCGC
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Amino Acid Sequence |
>Fe-S protein assembly chaperone HscA
MALLQIAEPGQSPQPHQRRLAVGIDLGTTNSLVAALRSGVTAPLADADGQVILPSVVRYHADHVEVGAQAKLAAATDPFNTISSVKRLMGRGLADVKQMG EQLPYRFRQAESQMPFIETVQGAKSPVEVSAEILRALRLRAEESLGGELVGAVITVPAYFDDAQRQATKDAARLAGLNVLRLLNEPTAAAVAYGLDRQAE GVVAIYDLGGGTFDISILRLTKGVFEVLATGGDTALGGDDFDHTVADWILECAGVSGDLEPGAQRELLKIACDAKERLTDVDVVTVAYAGWSGELHRETF DALIEPMIARSLKSCRRAVRDSGVELEEITAVVMVGGSTRVPKVRSAVGQLFGREPLTDIDPDEVVAIGAAIQAETLAGNNRDGEELLLLDVIPLSLGLE TMGGLMEKIIPRNTTIPVARAQDFTTYKDGQSAMMIHVLQGERELISDCRSLARFELRGIPPMVAGAAKIRVTFQVDADGLLSVSARELASGVEASIQVK PSYGLTDGEIARMLEDSFRKADEDRDARALREQLVDAQRLLEAVEAALAADGERLLSAEERLAIDSQMAGLRGLLDSQDAVAIERQTKRLSQITDAFAAR RLDSTVKAALAGRRLNDIED
BLASTP |
DIAMOND BLASTP (DIAMOND is faster than BLASTP)
Search for conserved domains in this protein at NCBI CDD site
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