Pseudomonas stutzeri RCH2, Psest_0612
Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
Sequence Data
| Strain | Pseudomonas stutzeri RCH2 chromosome, complete genome. [Details] | |
| DNA Sequence Upstream of Gene |
CTGCCGAACCATCCTCATGACTGCAGCTCGTGCTAACAACTGCCCATGATGATTGCAATGGGAACAAGGCTAGCAACATCAGCAAAACTATTTTTCTCAT CCAAGGCAAAACGATGACTTCCTGGTTTAGATGTCGAATCCAATCATAAGAACTACCCCCGCCAAGACGCGAAACACATGCGCCTCTACTGCGATAGTGA TTCGCCCTGAATTTAGTAGACAAATACACGAAAGCGTTTTTATCAGCCTTGCCAAGCCGGCGAGATAGCTGATGGCTATGGGGTGGTGACTTTAAATAAG TGTGGATAACGACCTGGTGACCGCAACATTACAAATCTGTAATCGAAGGAGTGCGCGATTGGGCTTCCTCAGATTACAAAATAGTCATTTGCCGCTAATC CTGCCGTCATCTCTAGGGGAAGAACATGGCCAAGCGCTAAAAACAAAAAGGCGAAAGGCGTCATTCGAGCACTGACCTGCCGTACATAAGGAGCATCATC
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| DNA Sequence for Gene |
>Psest_0612
ATGAGCAAAAAGGCCGTTTTTTCGCTGACAGCCCTTTCACTGGCATTGGGCAGCGCCCCGGTCTTTGCCCAATCGGAAACAGCCGAGGGCTTCATCGAAG GCAGCACGCTATCGCTGATAAATCGCAACTTCTATTTCAATCGGGATTTTCGCGACGGTGAGAGTGCCGCCGGCAATGGCTACTCCGAGGAATGGGCCCA CGGATTGATGGCCTTCTTCGAGTCCGGATATACCCAAGGCTCGGTAGGGATTGGCTTCGACGCTTTCGCCATGCTCGGCCTCAAGCTCGACTCCGGTTCG GGGCGCTCCGGTGTGGGCGGCAGCATCGACCTGCTTCCCCACGACAGCGCTGGCGATCCTGAGGATGACTTCACACGGGTGGGGGGCGCGGTGAAAGCAC GCTTGCTGGACACCGAGATCAAGGCCGGCGATGTATTTCCCACTACACCTGTCGTGCACTTCGGCGACTCTCGGCTGCTGCCGGAGTCTTTCAAGGGTGT CACCGTTGTGAACAACTCGCTGGACGACCTCACCCTTCAGGGAGGCCGCTTGCACGCGATGAGCCAGCCCAACACCAGTAACATGAACGAAGACTTCGTC ACCTTCTACGGCGGGGGCGTAGACGCGCCTTGGCTCGGCTACGCAGGCGGTGACTACAGCGTGAATGAAAATATCAGTCTTAGCCTGTACACCAGCCGCC TCAAAGATGCCTGGAACCAGCATTACTTCGGTGCGTCGGCCACCTATCCGCTCTCCGATATCGTCGCGCTGCTGGCCAGCTTCAACTATTACAAGGCAAC CGACGAAGGCCGTGAGTTGCTGGGCGAGTTCAACAACAACATCTGGAGCTCCAGCCTGGGTGTCGCCTTCGGCGCGCACACCGTCACGGCGTCGTATCAG CGAAACAACGGTAACAACGACTTTGACTACTTGCGCCAGGCGGACTCGATCTACCTGAACAACTCCATTCAGTACAGTGATTTCAACTCACCTAAAGAGC AGTCCTGGATGCTGCGCTACGACCTGAACATGGCGGAGTACGGCATACCCGGGCTTACTTTCATGACCCGCTACGCCCGCGGTTGGGGCGCCGATTACAG CAACGCGAACGAGGTGTACATGCGCCAAGACGATAACGGTGCGCCGCTGACGGGACAGAACCGCTGGGAACGCGACGTCGAAGCCCGCTACGTTGTACAG ACTGGCTCTCTCAAGGATTTGTCTCTGCGGGTGCGCCAGGCTACCACGCGGGCGACTGCTTTCGAGTCCGACCTCGATGAGGTCCGATTCATCGCCGAGT ACCCTCTCTCGATCTTGTGA
BLASTN Search
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DIAMOND BLASTX Search (DIAMOND is faster than BLASTX)
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| DNA Sequence Downstream of Gene |
AACACCATGAGCAACACCACATCTTCTTTAGTTTTGCTCCCTTGGTTTGAAGATGTGTTTCAGGCGCCCATCAGGGCGCCTTTTTTCGTTTGGTGCACCC GCTCGCGCTGCGGGTCAACCAAATGACCGGTAGATTACAAATTCGCAAGATAGCCCTCACAGGGCTTTTACCGCGTTAAAGTGCTTCCCGCTTCCCTGGG CAGATCTTTTCGCCTCTGCCTTTCACGCTAGAGCCAAGCCGCTTTCGTCTTGACCTAGTTACTACATGGATTTTTTTGGTTCCGCTTACCGCGCACCTCC TTGCCGAGTTACCTCAAAACATGCGCATCCTGGTTGTCGAAGACGAGATCAAAGCTGCGGAATACTTGCAGCAGGGTCTTATCGAATGTGGTTACTTGGT CGATTGCGTAAGTGATGGCCTCGATGGGTTTCACCTGGCACTGCAGAACGACTATGACATCGTGCTGCTAGATGTGAATCTGCCAACCATGGATGGGTGG
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| Amino Acid Sequence |
>outer membrane porin, OprD family
MSKKAVFSLTALSLALGSAPVFAQSETAEGFIEGSTLSLINRNFYFNRDFRDGESAAGNGYSEEWAHGLMAFFESGYTQGSVGIGFDAFAMLGLKLDSGS GRSGVGGSIDLLPHDSAGDPEDDFTRVGGAVKARLLDTEIKAGDVFPTTPVVHFGDSRLLPESFKGVTVVNNSLDDLTLQGGRLHAMSQPNTSNMNEDFV TFYGGGVDAPWLGYAGGDYSVNENISLSLYTSRLKDAWNQHYFGASATYPLSDIVALLASFNYYKATDEGRELLGEFNNNIWSSSLGVAFGAHTVTASYQ RNNGNNDFDYLRQADSIYLNNSIQYSDFNSPKEQSWMLRYDLNMAEYGIPGLTFMTRYARGWGADYSNANEVYMRQDDNGAPLTGQNRWERDVEARYVVQ TGSLKDLSLRVRQATTRATAFESDLDEVRFIAEYPLSIL
BLASTP |
DIAMOND BLASTP (DIAMOND is faster than BLASTP)
Search for conserved domains in this protein at NCBI CDD site
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