Pseudomonas stutzeri RCH2, Psest_0003

Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown

Gene Ontology

Ontology Accession Term GO Evidence Evidence Ontology (ECO) Code Reference Comments
Molecular Function GO:0003677 DNA binding
ISM
Inferred from Sequence Model
Term mapped from: InterPro:cd00140
 ECO:0000259
match to InterPro signature evidence used in automatic assertion
Cellular Component GO:0009360 DNA polymerase III complex
ISM
Inferred from Sequence Model
Term mapped from: InterPro:cd00140
 ECO:0000259
match to InterPro signature evidence used in automatic assertion
Molecular Function GO:0008408 3'-5' exonuclease activity
ISM
Inferred from Sequence Model
Term mapped from: InterPro:PF00712
 ECO:0000259
match to InterPro signature evidence used in automatic assertion
Molecular Function GO:0003887 DNA-directed DNA polymerase activity
ISM
Inferred from Sequence Model
Term mapped from: InterPro:PF00712
 ECO:0000259
match to InterPro signature evidence used in automatic assertion
Biological Process GO:0006260 DNA replication
ISM
Inferred from Sequence Model
Term mapped from: InterPro:cd00140
 ECO:0000259
match to InterPro signature evidence used in automatic assertion

Functional Classifications Manually Assigned by PseudoCAP

Pathways

Database Xref Pathway Version Evidence PMID
KEGG psh00240 Pyrimidine metabolism 81.0+/01-23, Jan 17 ECO:0000249
sequence similarity evidence used in automatic assertion
KEGG psh00230 Purine metabolism 81.0+/01-23, Jan 17 ECO:0000249
sequence similarity evidence used in automatic assertion
KEGG psh03030 DNA replication 81.0+/01-23, Jan 17 ECO:0000249
sequence similarity evidence used in automatic assertion
KEGG psh01100 Metabolic pathways 81.0+/01-23, Jan 17 ECO:0000249
sequence similarity evidence used in automatic assertion
KEGG psh03430 Mismatch repair 81.0+/01-23, Jan 17 ECO:0000249
sequence similarity evidence used in automatic assertion
KEGG psh03440 Homologous recombination 81.0+/01-23, Jan 17 ECO:0000249
sequence similarity evidence used in automatic assertion

Functional Predictions from Interpro

Analysis Accession Description Interpro Accession Interpro Description Amino Acid Start Amino Acid Stop E-value
SMART SM00480 pol35 IPR001001 DNA polymerase III, beta sliding clamp 17 363 0.0
SUPERFAMILY SSF55979 DNA clamp IPR046938 DNA clamp superfamily 1 120 6.91E-31
Gene3D G3DSA:3.10.150.10 DNA Polymerase III, subunit A, domain 2 - - 249 367 2.1E-32
Pfam PF02767 DNA polymerase III beta subunit, central domain IPR022637 DNA polymerase III, beta sliding clamp, central 130 244 2.7E-39
CDD cd00140 beta_clamp IPR001001 DNA polymerase III, beta sliding clamp 1 366 0.0
PIRSF PIRSF000804 DNA_pol_III_b IPR001001 DNA polymerase III, beta sliding clamp 1 367 1.4E-123
SUPERFAMILY SSF55979 DNA clamp IPR046938 DNA clamp superfamily 126 245 7.49E-31
Pfam PF02768 DNA polymerase III beta subunit, C-terminal domain IPR022635 DNA polymerase III, beta sliding clamp, C-terminal 247 366 2.5E-40
Pfam PF00712 DNA polymerase III beta subunit, N-terminal domain IPR022634 DNA polymerase III, beta sliding clamp, N-terminal 1 119 3.3E-41
PANTHER PTHR30478 DNA POLYMERASE III SUBUNIT BETA IPR001001 DNA polymerase III, beta sliding clamp 1 367 1.0E-129
FunFam G3DSA:3.10.150.10:FF:000001 Beta sliding clamp - - 1 123 2.1E-53
Gene3D G3DSA:3.10.150.10 DNA Polymerase III, subunit A, domain 2 - - 1 123 2.0E-49
Gene3D G3DSA:3.10.150.10 DNA Polymerase III, subunit A, domain 2 - - 125 248 2.6E-40
SUPERFAMILY SSF55979 DNA clamp IPR046938 DNA clamp superfamily 246 367 4.71E-37
NCBIfam TIGR00663 JCVI: DNA polymerase III subunit beta IPR001001 DNA polymerase III, beta sliding clamp 1 367 4.9E-110

Search for additional functional domains at the NCBI CDD database website. Go to this protein's amino acid sequence and follow the link.