Pseudomonas stutzeri DSM 10701, PSJM300_06840 (rimO)
Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
Sequence Data
| Strain | Pseudomonas stutzeri DSM 10701 chromosome, complete genome. [Details] | |
| DNA Sequence Upstream of Gene |
TCGGCCTTGTATCTGTATCGCCGCGAGCTGCCCTGGAACTGGAAAATAGCCCTGAGCTTACTTGCGCTGACACTGCTCAGCGCCAGGACGGAGCTCTGGT TCTACATCCACGTGCTGACGCTGCCGTATCTGACCATCTACCTGGCCCACCTCCGCATTCCGCGGCTGTCCGGCTTCGGCAAGTACGGCGACTTTTCCTA CGGCATCTATATCTTCAGCTTCCCGATCCAGCAGTTGCTGATGCACTGGCTCGGCCCGCAACTCTCGCTGGGTACGTTCATGGCGATCAGCCTGTCGGCT AGCATCGCCATCGCGGCGTTGTCCTGGCACTTCATCGAATCCCCCGCCCTGCAGCTGAAACGCTATCTGCCCCGCACACGCAAGCACCTCGCGCGCACGG ATTTCAGCCCTGCGCCCTGACGACGCACGGATAGATCGAAAAACCGCGATTCGCTGTATACTCCCGCGCCTTTTTTATACACGACGTCCTGGGAGTGTCG
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| DNA Sequence for Gene |
>PSJM300_06840
|rimO
ATGAGCAAAGCGCCAACTGTCGGATTTGTGAGCCTGGGTTGCCCCAAGGCAACGGTCGATTCCGAACGCATCCTGACCCAGCTGCGTACGGAGGGTTACC AGATCGTGCCCACCTACCAGGACGCCGACGTGGTGGTGGTCAACACCTGCGGCTTCATCGACAGTGCCAAGGCGGAATCGCTGGATGCCATCGGCGAAGC CATCGCCGAGAACGGCAAGGTGATCGTCACCGGCTGCATGGGCGTGGCCGAAGACAACATCCGTAACGTGCACCCCAGCGTGCTTGCCGTTACCGGTCCT CAGCAATACGAGCAGGTCGTCAATGCGGTGCACGAAGTGGTGCCGCCGAACATCGACCACGATCCCTTCGTCGATCTGGTGCCGCCGCAGGGCATCAAGC TCACCCCGCGTCACTACGCCTACCTGAAGATTTCCGAAGGCTGCAACCACAGCTGCAGCTTCTGCATCATCCCGTCCATGCGCGGCAAGCTGGTCAGCCG CCCGGTGGGCGATGTGCTCAGCGAAGCCGAGCGGCTGGTCAAGGCCGGCGTCAAGGAGATTCTGGTGATCTCCCAGGACACCAGCGCCTACGGCGTCGAC GTCAAGTACAAGACCGATTTCTGGAATGGCCAGCCGGTCAAGACGCGCATGCTGGAGCTGTGCCAGGCGCTGTCGAGCATGGGCGTGTGGGTGCGTCTGC ATTACGTTTACCCCTACCCGAACGTCGACGATGTGATTCCGCTGATGGCCGCAGGCAAGCTGCTGCCCTACCTGGACATCCCCTTCCAGCACGCCAGCCC GAAGGTGCTCAAGGCCATGAAACGCCCGGCCTTCGAGGACAAGACCCTGGCCCGCATCAAGCAATGGCGCGAGATCTGCCCGGAGCTGACCATTCGTTCC ACCTTCATCGTCGGCTTCCCCGGCGAGACCGAGGAGGACTTCCAGTACCTGCTGGACTGGCTCACCGAAGCGCAACTGGATCGCGTCGGCTGCTTCCAGT ACTCACCGGTTGAAGGCGCACCCGCCGAAGAACTAGGCCTGGAGCCGGTGCCGGACGACATCAAGCAGGATCGCTGGGATCGCTTCATGGCCCACCAGCA GGCCATCAGCGCCGCACGCCTGGAACGCAAGATCGGCCAGGAAATCGAAGTGCTGATCGACGAAGTCGACGAAGATGGCGCCATCGGCCGCTCCTGTGCC GACGCGCCGGAGATCGACGGCCTGGTCTACATCGACAGCGAGCAACCGCTGCAGGCCGGCGAAAAGGTCTGGGTGCGCGTCACCCATTCGGACGAATACG ACCTCTGGGCCGAAGCGATCTGA
BLASTN Search
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DIAMOND BLASTX Search (DIAMOND is faster than BLASTX)
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| DNA Sequence Downstream of Gene |
GAGCGACCCCGCTGTTGCCCGTCGGCTTTCGACGGGCATCGGAAAGTGAAGTGATCAGCGCCCTTTCTGGCCGCGCCGTCGGGAATGATGGCAACATCGC TTCCCCGCCCGACCTCGAGCCGCCACCCGCCATGCCCCATGACATCGAGCCCATCGGCTATCTGCGCTCCTGCTTCAGGGAGAAGTTCGCCATTCCGCGT CAGCCGCACCTGGCGCCGGCCGCCTGTGGCGTGCTGGAATTGCTGCCGCCATTCGACAGCGGCGAGGCGGTCGCGGGGCTGGAGCAGGTCAGCCATGTCT GGCTGCTGTTCCTGTTCCATCAGGCGCTGGAGGACAAGCCACGTCTGCGGGTTCGACCGCCGCGCCTGGGCGGCAACCGCATGGTCGGCGTCTTCGCCAC GCGCGCGACGCATCGGCCGAACGGTATCGGCCAGTCGGTGGTAAGGCTCGACCGGGTCGAAGCGGGACGCCTGTTCGTTTCGGGCATCGATCTGCTGGAC
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| Amino Acid Sequence |
>30S ribosomal protein S12 methylthiotransferase
MSKAPTVGFVSLGCPKATVDSERILTQLRTEGYQIVPTYQDADVVVVNTCGFIDSAKAESLDAIGEAIAENGKVIVTGCMGVAEDNIRNVHPSVLAVTGP QQYEQVVNAVHEVVPPNIDHDPFVDLVPPQGIKLTPRHYAYLKISEGCNHSCSFCIIPSMRGKLVSRPVGDVLSEAERLVKAGVKEILVISQDTSAYGVD VKYKTDFWNGQPVKTRMLELCQALSSMGVWVRLHYVYPYPNVDDVIPLMAAGKLLPYLDIPFQHASPKVLKAMKRPAFEDKTLARIKQWREICPELTIRS TFIVGFPGETEEDFQYLLDWLTEAQLDRVGCFQYSPVEGAPAEELGLEPVPDDIKQDRWDRFMAHQQAISAARLERKIGQEIEVLIDEVDEDGAIGRSCA DAPEIDGLVYIDSEQPLQAGEKVWVRVTHSDEYDLWAEAI
BLASTP |
DIAMOND BLASTP (DIAMOND is faster than BLASTP)
Search for conserved domains in this protein at NCBI CDD site
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