Pseudomonas stutzeri CCUG 29243, A458_17935

Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown

Gene Ontology

Ontology Accession Term GO Evidence Evidence Ontology (ECO) Code Reference Comments
Molecular Function GO:0003697 single-stranded DNA binding
ISM
Inferred from Sequence Model
Term mapped from: InterPro:PIRSF002070
 ECO:0000259
match to InterPro signature evidence used in automatic assertion
Biological Process GO:0006260 DNA replication
ISM
Inferred from Sequence Model
Term mapped from: InterPro:PIRSF002070
 ECO:0000259
match to InterPro signature evidence used in automatic assertion

Functional Classifications Manually Assigned by PseudoCAP

Pathways

Database Xref Pathway Version Evidence PMID
KEGG psc03030 DNA replication 81.0+/01-23, Jan 17 ECO:0000249
sequence similarity evidence used in automatic assertion
KEGG psc03430 Mismatch repair 81.0+/01-23, Jan 17 ECO:0000249
sequence similarity evidence used in automatic assertion
KEGG psc03440 Homologous recombination 81.0+/01-23, Jan 17 ECO:0000249
sequence similarity evidence used in automatic assertion

Functional Predictions from Interpro

Analysis Accession Description Interpro Accession Interpro Description Amino Acid Start Amino Acid Stop E-value
PIRSF PIRSF002070 SSB IPR011344 Single-stranded DNA-binding protein 1 160 8.7E-37
NCBIfam TIGR00621 JCVI: single-stranded DNA-binding protein IPR011344 Single-stranded DNA-binding protein 3 164 4.6E-57
MobiDBLite mobidb-lite consensus disorder prediction - - 127 150 -
MobiDBLite mobidb-lite consensus disorder prediction - - 108 164 -
Pfam PF00436 Single-strand binding protein family IPR000424 Primosome PriB/single-strand DNA-binding 5 108 5.5E-39
Hamap MF_00984 Single-stranded DNA-binding protein. IPR011344 Single-stranded DNA-binding protein 5 115 37.662125
Gene3D G3DSA:2.40.50.140 - IPR012340 Nucleic acid-binding, OB-fold 1 152 4.7E-51
SUPERFAMILY SSF50249 Nucleic acid-binding proteins IPR012340 Nucleic acid-binding, OB-fold 3 164 7.2E-59
CDD cd04496 SSB_OBF IPR000424 Primosome PriB/single-strand DNA-binding 8 103 1.37537E-40
PANTHER PTHR10302 SINGLE-STRANDED DNA-BINDING PROTEIN IPR011344 Single-stranded DNA-binding protein 3 128 8.9E-30

Search for additional functional domains at the NCBI CDD database website. Go to this protein's amino acid sequence and follow the link.