Pseudomonas stutzeri CCUG 29243, A458_12045 (rimO)
Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
Sequence Data
| Strain | Pseudomonas stutzeri CCUG 29243 chromosome, complete genome. [Details] | |
| DNA Sequence Upstream of Gene |
AGCTTGTCGCCGGAGAACAGTAAAGCGGCGGTAAAAGCGTGCCCCACGAATTTGACGTCATCTATGCACAGTGCGGTAGCGCCAATTTCTACAGAACAAT CGTAATAGCCAGCCTGATTGCTGTATTTGCTGAACGGCGCGCCATACACATGCTCCTTGAACAGCGCATCATCGGCCAAAGCGCTCGTGCACAGCGCCAT GGCAGCGGTCATCGCCAGGCCTTTCGATAGCAACGTTTTCATGAAGTCCATTTCCCCGGTTGAATGAAGGCGGCGATGATAGCCTTTTGATACCTCGCGT AACACGATTCGCAGTACGACCGCCGCTTGCGACCAATGGTTCGAGGTTTAGCCCAGCCAGACCGCCACGCTCCCGGCCAAGGCAATGGAACGGTGAACCG CTGAACGGTCGAGCGCTGCCGCTTTCAGTCTGGCTAAAAAATGCTCAGCTCTATATACTCGCGCGCTTTTTTCATGCGCGGTTTTCGAGGTTCAAAGTCG
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| DNA Sequence for Gene |
>A458_12045
|rimO
ATGAGCAAAACGCCAACAGTCGGATTCGTGAGCTTGGGTTGCCCCAAGGCAACGGTCGACTCTGAACGCATCCTCACCCAGCTGCGCATGGAGGGCTACC AGATCGTGCCGTCCTACGAGGATGCCGATGTAGTGGTGGTCAACACCTGCGGTTTCATCGACAGCGCCAAGGCCGAATCGCTGGACGCCATCGGCGAGGC GATCGCCGAGAACGGCAAGGTGATCGTCACCGGCTGCATGGGCGTGGACGAGAACAACATCCGCGGCGTACATCCCAGCGTGCTGGCCGTCACCGGGCCG CAGCAGTACGAGCAAGTGGTCAACGCGGTGCATGAAGTGGTGCCGCCGAACATCGAGCACGACCCCTTCGTCGACCTGGTGCCGCCGCAGGGCATCAAAC TCACCCCGCGCCACTACGCCTACCTGAAGATTTCCGAGGGCTGCAACCACAGCTGCAGCTTCTGCATCATCCCGTCGATGCGCGGCAAGCTGGTCAGCCG TCCGGTGGGCGATGTGCTCAGTGAAGCCGAGCGGCTGGTCAAGGCCGGCGTGAAGGAAGTCCTGGTGATCAGCCAGGACACCAGCGCCTATGGCGTCGAC CTCAAGTACAAGCTGGATTTCTGGAACGGCCAGCCGGTTAAGACGCGCATGCTCGAGCTGTGCGAGGAGCTGGGCAAGATGGGCGTCTGGGTGCGCCTGC ACTACGTTTATCCGTACCCGAATGTCGACGACGTGATCCCGCTGATGGCCGCCGGCAAGATCCTGCCGTACCTGGACATCCCCTTCCAGCACGCCAGCCC GAAGGTGCTCAAGGCCATGAAGCGCCCGGCCTTCGAAGACAAGACCCTCGCGCGCATCAAGAAGTGGCGCGAGATCTGCCCCGAGCTGACCATCCGCTCG ACCTTCATCGTCGGCTTCCCCGGCGAGACCGAAGAAGATTTTCAGTACCTGCTCGACTGGCTGACCGAAGCCCAGCTCGACCGCGTCGGCTGCTTCCAGT ATTCGCCGGTTGACGGCGCACCGGCCGAGGTCATGGGCCTGGAACCGGTACCGGACGAGATCAAGCAGGATCGCTGGGACCGCTTCATGGCGCACCAGCA GGCCATCAGCGCCGCGCGTCTGCAGCTGAAGGTCGGCAAGGAACTGGACGTGCTGATCGATGAAGTGGACGAGGACGGCGCCATCGGCCGCTCCTGGGCC GACGCCCCGGAGATCGACGGCATGGTCTACATCGACAGCGAGAAACCGCTGCAGCCGGGCGACAAGGTCCGCGTGCGCGTCACCCACGCCGACGAGTACG ACCTCTGGGCCGAAGTGATCTGA
BLASTN Search
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DIAMOND BLASTX Search (DIAMOND is faster than BLASTX)
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| DNA Sequence Downstream of Gene |
TCCGCCCCGCCTAACGAAAACGCCCCGCTACTGCGGGGCGTTTTCGTTTCTGGCTACGCGCATCGGTCGCTGCACACCAATTAGCGCCAGCCGCGTAGGG TGGAAAACGGCGAAGCCTTTTCCACCACCTGACGGCGAACGCGTCAACGCTGCGGTGGTTGCCGCACCGGTGCGCCGTTGGCCACGTAGTAGCTCGCCGT GCTGCGCGGCAGCGGCTCGCGACCGCGAATCCGGTCGGCGATCTTCTCGGCCAGCATGATGGTGGTGGCGTTGAGGTTGCCGGTGATGATCTGCGGCATG ATCGAGGCATCCACCACGCGCAACCCGTCCAGGCCATGCACGCGCCCCTGCCCGTCCACCACGGCCATATCGTCCGTGCCCATCTTACAGGAGCACGACG GGTGATAGGCCGTCTCAGCGTGCTCGCGGACAAAGGCGTCCAGCTCGGCATCGCTCTGCGCCTCCACGCCGGGGTTCAGCTCGCGACCACGGTAGGGATC
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| Amino Acid Sequence |
>ribosomal protein S12 methylthiotransferase
MSKTPTVGFVSLGCPKATVDSERILTQLRMEGYQIVPSYEDADVVVVNTCGFIDSAKAESLDAIGEAIAENGKVIVTGCMGVDENNIRGVHPSVLAVTGP QQYEQVVNAVHEVVPPNIEHDPFVDLVPPQGIKLTPRHYAYLKISEGCNHSCSFCIIPSMRGKLVSRPVGDVLSEAERLVKAGVKEVLVISQDTSAYGVD LKYKLDFWNGQPVKTRMLELCEELGKMGVWVRLHYVYPYPNVDDVIPLMAAGKILPYLDIPFQHASPKVLKAMKRPAFEDKTLARIKKWREICPELTIRS TFIVGFPGETEEDFQYLLDWLTEAQLDRVGCFQYSPVDGAPAEVMGLEPVPDEIKQDRWDRFMAHQQAISAARLQLKVGKELDVLIDEVDEDGAIGRSWA DAPEIDGMVYIDSEKPLQPGDKVRVRVTHADEYDLWAEVI
BLASTP |
DIAMOND BLASTP (DIAMOND is faster than BLASTP)
Search for conserved domains in this protein at NCBI CDD site
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