Pseudomonas stutzeri CCUG 29243, A458_10100 (ligD)

Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown

Gene Ontology

Ontology Accession Term GO Evidence Evidence Ontology (ECO) Code Reference Comments
Biological Process GO:0006281 DNA repair
ISM
Inferred from Sequence Model
Term mapped from: InterPro:PF04679
 ECO:0000259
match to InterPro signature evidence used in automatic assertion
Molecular Function GO:0005524 ATP binding
ISM
Inferred from Sequence Model
Term mapped from: InterPro:PF01068
 ECO:0000259
match to InterPro signature evidence used in automatic assertion
Molecular Function GO:0003910 DNA ligase (ATP) activity
ISM
Inferred from Sequence Model
Term mapped from: InterPro:PF04679
 ECO:0000259
match to InterPro signature evidence used in automatic assertion
Biological Process GO:0006310 DNA recombination
ISM
Inferred from Sequence Model
Term mapped from: InterPro:PF04679
 ECO:0000259
match to InterPro signature evidence used in automatic assertion

Functional Classifications Manually Assigned by PseudoCAP

Pathways

Database Xref Pathway Version Evidence PMID
KEGG psc03450 Non-homologous end-joining 81.0+/01-23, Jan 17 ECO:0000249
sequence similarity evidence used in automatic assertion

Functional Predictions from Interpro

Analysis Accession Description Interpro Accession Interpro Description Amino Acid Start Amino Acid Stop E-value
CDD cd07971 OBF_DNA_ligase_LigD - - 419 535 2.00637E-50
MobiDBLite mobidb-lite consensus disorder prediction - - 190 218 -
NCBIfam TIGR02778 JCVI: non-homologous end-joining DNA ligase, polymerase domain IPR014145 DNA ligase D, polymerase domain 562 806 3.1E-87
MobiDBLite mobidb-lite consensus disorder prediction - - 529 562 -
NCBIfam TIGR02776 JCVI: DNA ligase D IPR014143 DNA ligase D 246 836 0.0
CDD cd07906 Adenylation_DNA_ligase_LigD_LigC - - 234 417 5.38656E-75
NCBIfam TIGR02779 JCVI: non-homologous end-joining DNA ligase, ligase domain IPR014146 DNA ligase D, ligase domain 236 536 3.0E-106
Gene3D G3DSA:3.90.920.10 DNA primase, PRIM domain - - 569 853 1.3E-98
Pfam PF01068 ATP dependent DNA ligase domain IPR012310 DNA ligase, ATP-dependent, central 233 416 1.2E-25
Pfam PF13298 DNA polymerase Ligase (LigD) IPR014144 DNA ligase D, 3'-phosphoesterase domain 37 140 3.9E-39
SUPERFAMILY SSF56091 DNA ligase/mRNA capping enzyme, catalytic domain - - 232 416 1.03E-44
Pfam PF04679 ATP dependent DNA ligase C terminal region IPR012309 DNA ligase, ATP-dependent, C-terminal 435 530 1.1E-24
SUPERFAMILY SSF50249 Nucleic acid-binding proteins IPR012340 Nucleic acid-binding, OB-fold 419 538 2.48E-27
NCBIfam TIGR02777 JCVI: DNA ligase D, 3'-phosphoesterase domain IPR014144 DNA ligase D, 3'-phosphoesterase domain 3 160 1.1E-70
CDD cd04862 PaeLigD_Pol_like IPR033651 LigD polymerase domain, PaeLigD-type 579 805 3.52592E-124
Gene3D G3DSA:3.30.1490.70 - - - 245 414 3.1E-44
MobiDBLite mobidb-lite consensus disorder prediction - - 529 548 -
PANTHER PTHR42705 BIFUNCTIONAL NON-HOMOLOGOUS END JOINING PROTEIN LIGD - - 221 848 1.7E-108
Gene3D G3DSA:2.40.50.140 - IPR012340 Nucleic acid-binding, OB-fold 418 538 1.1E-36
Gene3D G3DSA:3.30.470.30 DNA ligase/mRNA capping enzyme - - 258 373 3.1E-44

Search for additional functional domains at the NCBI CDD database website. Go to this protein's amino acid sequence and follow the link.