Strain | Pseudomonas aeruginosa strain AZPAE14817 AZPAE14817_contig_2, whole genome shotgun sequence. [Details] | |
DNA Sequence Upstream of Gene |
CCGGTGCGCCTGGCGCGCGATGGCGAGCCGCCGATACCGGGGCAGATCCTGCTGGCGGGGACCAACAATCACATCCGCCTGCTGCGCAACGGTTCGCTGG TGTACACCGCCGAACCGCGTTCTTTCGTCTACCGGCCGTCCATCGACGTGTTTTTCGAGAGCGTGGCGAATTATTGGCGTGGCGATGCCGTGGGCGTGCT GCTGACCGGCATGGGCCGCGACGGCGCCCAGGGCCTCAAGCAGATGCGCGAGCGCGGTTTCCTCACCATCGCCCAGGACCAGGCCAGTTGCGCAGTCTAC GGGATGCCGAAGGCCGCGGCGGCGATCGATGCAGCGGTGCAGATCCTTTCCCTGGAAAAGATCGCCCCGCGCCTGGCGGAGGTATTCGATTAGCCGGGTT CGACTCCGGCCAGGCGCCAGGGTAGGCGCCGGCGCCCGCCGCGGCGGTGCGTGGAACAGCATTCAATTTGATACGAGGGGCCCCGGTCCCGGAGAGAAAC
|
|
DNA Sequence for Gene |
>NR36_RS03560
ATGCACAACCCTCATGAGAGCAAGACCGACCTGGGCGCCCCTCTGGACGGCGCGGTCATGGTACTGCTTGTCGATGATCAGGCCATGATCGGAGAGGCTG TGCGTCGCTCACTGGCGAGCGAGGCGGGCATCGACTTCCATTTCTGTTCCGATCCGCAGCAGGCGGTGGCGGTGGCCAACCAGATCAAGCCGACGGTGAT CCTCCAGGACCTGGTGATGCCCGGCGTCGACGGCCTCACGCTGCTCGCTGCCTACCGCGGCAACCCGGCGACCCGCGACATCCCGATCATCGTCCTGTCG ACCAAGGAAGAGCCGACGGTGAAGAGCGCGGCGTTCGCCGCCGGCGCCAACGACTACCTGGTCAAGCTGCCGGACGCCATCGAGCTGGTGGCGCGGATCC GCTACCACTCGCGTTCGTACATCGCCCTGCAGCAACGCGACGAGGCCTATCGGGCGCTGCGCGAGAGCCAGCAGCAGTTGCTGGAGACCAACCTGGTGCT GCAGCGGCTGATGAACTCCGACGGCCTGACCGGGCTCTCCAACCGTCGTCACTTCGACGAATACCTGGAGATGGAGTGGCGCCGCTCGCTGCGCGAGCAG TCGCAACTGTCGCTGCTGATGATCGACGTGGACTATTTCAAGAGCTACAACGACACCTTCGGCCACGTCGCCGGCGACGAGGCCCTGCGCCAGGTCGCCG GGGCCATCCGCGAGGGCTGCAGTCGCTCCTCGGACCTGGCGGCTCGGTACGGCGGCGAGGAGTTCGCCATGGTCCTCCCGGGCACCTCGCCGGGCGGCGC ACGGTTGCTGGCGGAGAAGGTCCGGCGCACGGTGGAGAGCCTGCAGATCAGCCACGACCAGCCACGCCCGGGCTCGCACCTGACCGTCAGCATCGGCGTC AGCACCCTGGTGCCGGGCGGCGGCGGGCAAACCTTCCGGGTTCTCATCGAGATGGCCGACCAGGCGCTCTACCAGGCCAAGAACAATGGCCGCAACCAGG TCGGCCTGATGGAACAGCCGGTGCCGCCGGCCCCGGCGGGCTGA
BLASTN Search
|
DIAMOND BLASTX Search (DIAMOND is faster than BLASTX)
|
|
DNA Sequence Downstream of Gene |
GCGGCGCGCGGCGGCCATGCGTCGCCGGCCGGCATTAAATAGAGGCCGGCGTACTGCCTGTGGGGCGCAAGTGCAGTATACTTCGCAGCTTTTCGACGTT TTCCCGCGAGTGAGCGCCAGCCATGGAAATCAACCCGATCCTCAACAGCATCAAGGACCTCTCCGAGCGCACCCAGACCATTCGGGGGTATCTTTGACTA CGATCAGAAGCATGATCGCCTGGTCGAAGTAAACCGCGAGCTCGAAGACCCCAACGTCTGGAACAACCCCGAATACGCCCAGAACCTCGGCCGCGAGCGC GCCCAGCTGGCGCAGGTGGTGGAAACCCTGGACGACCTGACCAGCGGCCTGGCCGACTCCCGCGACCTGCTGGACATGGCGGTCGAGGAAGACGACGAGG GTGCCGTCGACGACGTTGCCAACGAAGTCGAGCGTCTGCGCGAGATCCTCGAGAAGCTGGAGTTCCGCCGCATGTTCAGCGGCGAGATGGACCCGAACAA
|
|
Amino Acid Sequence |
>diguanylate cyclase
MHNPHESKTDLGAPLDGAVMVLLVDDQAMIGEAVRRSLASEAGIDFHFCSDPQQAVAVANQIKPTVILQDLVMPGVDGLTLLAAYRGNPATRDIPIIVLS TKEEPTVKSAAFAAGANDYLVKLPDAIELVARIRYHSRSYIALQQRDEAYRALRESQQQLLETNLVLQRLMNSDGLTGLSNRRHFDEYLEMEWRRSLREQ SQLSLLMIDVDYFKSYNDTFGHVAGDEALRQVAGAIREGCSRSSDLAARYGGEEFAMVLPGTSPGGARLLAEKVRRTVESLQISHDQPRPGSHLTVSIGV STLVPGGGGQTFRVLIEMADQALYQAKNNGRNQVGLMEQPVPPAPAG
BLASTP |
DIAMOND BLASTP (DIAMOND is faster than BLASTP)
Search for conserved domains in this protein at NCBI CDD site
|