Pseudomonas stutzeri DSM 4166, PSTAA_2339

Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown

Gene Ontology

Ontology Accession Term GO Evidence Evidence Ontology (ECO) Code Reference Comments
Biological Process GO:0019752 carboxylic acid metabolic process
ISM
Inferred from Sequence Model
Term mapped from: InterPro:PIRSF001362
 ECO:0000259
match to InterPro signature evidence used in automatic assertion
Molecular Function GO:0003824 catalytic activity
ISM
Inferred from Sequence Model
Term mapped from: InterPro:cd00377
 ECO:0000259
match to InterPro signature evidence used in automatic assertion
Molecular Function GO:0004451 isocitrate lyase activity
ISM
Inferred from Sequence Model
Term mapped from: InterPro:PIRSF001362
 ECO:0000259
match to InterPro signature evidence used in automatic assertion

Functional Classifications Manually Assigned by PseudoCAP

Pathways

Database Xref Pathway Version Evidence PMID
KEGG psr00630 Glyoxylate and dicarboxylate metabolism 81.0+/01-23, Jan 17 ECO:0000249
sequence similarity evidence used in automatic assertion
KEGG psr01120 Microbial metabolism in diverse environments 81.0+/01-23, Jan 17 ECO:0000249
sequence similarity evidence used in automatic assertion
KEGG psr01200 Carbon metabolism 81.0+/01-23, Jan 17 ECO:0000249
sequence similarity evidence used in automatic assertion
KEGG psr01100 Metabolic pathways 81.0+/01-23, Jan 17 ECO:0000249
sequence similarity evidence used in automatic assertion
KEGG psr01110 Biosynthesis of secondary metabolites 81.0+/01-23, Jan 17 ECO:0000249
sequence similarity evidence used in automatic assertion

Functional Predictions from Interpro

Analysis Accession Description Interpro Accession Interpro Description Amino Acid Start Amino Acid Stop E-value
Gene3D G3DSA:3.20.20.60 - IPR040442 Pyruvate kinase-like domain superfamily 3 531 6.7E-128
Pfam PF00463 Isocitrate lyase family IPR006254 Isocitrate lyase 429 530 1.6E-13
Pfam PF00463 Isocitrate lyase family IPR006254 Isocitrate lyase 333 399 1.4E-9
Pfam PF00463 Isocitrate lyase family IPR006254 Isocitrate lyase 88 270 5.3E-20
SUPERFAMILY SSF51621 Phosphoenolpyruvate/pyruvate domain IPR015813 Pyruvate/Phosphoenolpyruvate kinase-like domain superfamily 6 514 1.79E-124
PIRSF PIRSF001362 ICL IPR006254 Isocitrate lyase 416 531 8.0E-8
PIRSF PIRSF001362 ICL IPR006254 Isocitrate lyase 290 410 8.0E-12
PIRSF PIRSF001362 ICL IPR006254 Isocitrate lyase 4 278 1.4E-28
PANTHER PTHR21631 ISOCITRATE LYASE/MALATE SYNTHASE IPR006254 Isocitrate lyase 3 531 5.9E-126
CDD cd00377 ICL_PEPM IPR039556 ICL/PEPM domain 63 386 4.93798E-35

Search for additional functional domains at the NCBI CDD database website. Go to this protein's amino acid sequence and follow the link.