Pseudomonas stutzeri DSM 4166, PSTAA_0339 (ompR)

Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown

Gene Ontology

Ontology Accession Term GO Evidence Evidence Ontology (ECO) Code Reference Comments
Biological Process GO:0006355 regulation of transcription, DNA-templated
ISM
Inferred from Sequence Model
Term mapped from: InterPro:PF00486
 ECO:0000259
match to InterPro signature evidence used in automatic assertion
Biological Process GO:0000160 phosphorelay signal transduction system
ISM
Inferred from Sequence Model
Term mapped from: InterPro:PF00072
 ECO:0000259
match to InterPro signature evidence used in automatic assertion
Molecular Function GO:0003677 DNA binding
ISM
Inferred from Sequence Model
Term mapped from: InterPro:PF00486
 ECO:0000259
match to InterPro signature evidence used in automatic assertion

Functional Classifications Manually Assigned by PseudoCAP

Pathways

Database Xref Pathway Version Evidence PMID
KEGG psr02020 Two-component system 81.0+/01-23, Jan 17 ECO:0000249
sequence similarity evidence used in automatic assertion

Functional Predictions from Interpro

Analysis Accession Description Interpro Accession Interpro Description Amino Acid Start Amino Acid Stop E-value
CDD cd00383 trans_reg_C IPR001867 OmpR/PhoB-type DNA-binding domain 150 238 2.27134E-27
Gene3D G3DSA:6.10.250.690 - - - 91 128 2.8E-18
FunFam G3DSA:3.40.50.2300:FF:000008 Two-component response regulator OmpR - - 9 90 2.3E-42
SUPERFAMILY SSF52172 CheY-like IPR011006 CheY-like superfamily 8 133 1.57E-43
Gene3D G3DSA:1.10.10.10 - IPR036388 Winged helix-like DNA-binding domain superfamily 136 244 1.5E-29
PANTHER PTHR48111 REGULATOR OF RPOS IPR039420 Transcriptional regulatory protein WalR-like 12 237 5.0E-52
Pfam PF00072 Response regulator receiver domain IPR001789 Signal transduction response regulator, receiver domain 13 123 1.1E-31
SMART SM00448 REC_2 IPR001789 Signal transduction response regulator, receiver domain 11 122 5.9E-45
Pfam PF00486 Transcriptional regulatory protein, C terminal IPR001867 OmpR/PhoB-type DNA-binding domain 166 238 4.9E-22
SUPERFAMILY SSF46894 C-terminal effector domain of the bipartite response regulators IPR016032 Signal transduction response regulator, C-terminal effector 139 240 5.67E-26
FunFam G3DSA:1.10.10.10:FF:000023 Two-component response regulator OmpR - - 136 244 5.4E-59
Gene3D G3DSA:3.40.50.2300 - - - 9 90 3.3E-23
SMART SM00862 Trans_reg_C_3 IPR001867 OmpR/PhoB-type DNA-binding domain 161 238 8.8E-25

Search for additional functional domains at the NCBI CDD database website. Go to this protein's amino acid sequence and follow the link.