Strain | Pseudomonas aeruginosa strain AZPAE13757 AZPAE13757_contig_8, whole genome shotgun sequence. [Details] | |
DNA Sequence Upstream of Gene |
ATCGAGCCGAAGACCGGCTTCATGCTGATCGACACCCTGCTTTCCGACGAACAGGGCTCGTTCCTCGATGCCGTGCGCCACCTGATCCTGCCGGCCATCG TGCTGGGCACCATCCCGCTGGCGGTGATTGCCCGCATGACCCGCTCGGCGATGCTCGAGGTGCTGCGCGAAGACTATGTGCGCACCGCCCGCGCCAAGGG CCTGTCGCCGGCCCGGGTGGTCTTCGTGCACGCCCTGCGCAACGCGCTGATTCCGGTGCTGACGGTATTCGGCCTGCAGGTCGGCACGCTGCTCGCCGGC GCGGTGCTGACCGAAACCATCTTCTCCTGGCCGGGCATCGGCAAGTGGCTGATCGACGCCATCAGCCGTCGCGACTACCCGGTGGTGCAGAACGGCATCC TGCTGGTCGCCACCCTGGTCATCCTGGTCAATTTCGTCGTGGACATCCTCTACGGCCTGGCCAACCCGCGCATTCGCCACCAACGCTGAGGAGCCAGCCG
|
|
DNA Sequence for Gene |
>NQ34_RS11130
ATGAACGCCATGCACAACGCTCCCGCCAGCGACCCGAGCCTGGTCTACCCGTCCCCGCTGAAGGAATTCTGGCAGGCCTTCGCGCACAACAAGGGCGCCC TCGGCGGCCTGCTGTTCATGCTGCTGATCGTGTTCTGCGCGCTGTTCGCCCCCTGGGTCGCCCCCTACGATCCGAGCGAGCAGTTCCGGGACTTCCTGCT GACCCCGCCATCCTGGCTGGAAGGCGGCCAGGCGCGCTTCCTGCTCGGCACCGACGAGCTGGGCCGCGACCTGCTCTCGCGGCTGATCCACGGCGCCCGC CTGTCGCTGCTGATCGGCCTGTCCTCGGTGGTGATCTCGCTGATCCCCGGCATCCTCCTCGGCCTGCTCGCCGGCTTCTCGCCGAACCGTGCCGGGCCGC TGATCATGCGCCTGATGGACATCATGCTGGCGCTGCCGTCGCTGCTGCTGGCGGTGGCCATCGTGGCGATCCTCGGCCCGGGCCTGATCAACACCGTGAT CGCCATCGCCATCGTCTCGCTGCCGGCCTACGTACGCCTGACCCGCGCCGCGGTGATGACCGAGCTAAACCGCGACTACGTCACCGCCTCGCGCCTGGCC GGCGCCGGCACCCTGCGACTGATGTTCGTCTGCGTGCTGCCGAACTGCATGGCGCCGCTGATCGTCCAGGCCACCCTGAGCTTCTCTTCGGCGATCCTCG ACGCCGCCGCCCTCGGCTTCCTCGGCCTCGGCGTGCAACCGCCGACCCCCGAGTGGGGCACCATGCTCGCCTCCGCCCGCGACTACATCGAGCGCGCCTG GTGGGTGGTCAGCCTGCCCGGCCTGACCATCCTGCTCAGCGTACTGGCGATCAACCTGATGGGCGACGGCCTGCGCGACGCCCTCGATCCGAAACTGAAG AACGCGGCATGA
BLASTN Search
|
DIAMOND BLASTX Search (DIAMOND is faster than BLASTX)
|
|
DNA Sequence Downstream of Gene |
GGAGCACAACCATGAACAGCGCATCCGTATCCGCGCCACAGGAGACCGCCGCATGAGCCTCCTCGATATCAAGAACCTCAGCGTGCGCTTCGGCGACACC ACCGCCGTGCCCGTGGTCGACGGCCTCGACCTGAGCGTCGACAAGGGCGAGGTGCTGGCCATCGTCGGCGAGTCCGGCTCCGGCAAGTCGGTGACCATGA TGGCCCTGATGGGCCTGATCGACGCCCCCGGCTGGGTATCCGCCGATCACCTGCGCTTCGACGGCCACGACATGCTCACCCTCAAGGGCCGCCAGCGCCG GCGCATCGTCGGCAAGGACATGGCGATGGTATTCCAGGACCCGATGACCGCCCTCAACCCCAGCTACACCGTCGGCTACCAGATCGAGGAAGTCCTCCGC CTGCATCTCGGCCTGCGCGGCAAGGCCCTGCGCCAGCGCGCCCTGGAACTGCTCGAACGGGTCGAGATCCCGGCCGCCGCCAGCCGTCTCGACGCCTACC
|
|
Amino Acid Sequence |
>peptide ABC transporter
MNAMHNAPASDPSLVYPSPLKEFWQAFAHNKGALGGLLFMLLIVFCALFAPWVAPYDPSEQFRDFLLTPPSWLEGGQARFLLGTDELGRDLLSRLIHGAR LSLLIGLSSVVISLIPGILLGLLAGFSPNRAGPLIMRLMDIMLALPSLLLAVAIVAILGPGLINTVIAIAIVSLPAYVRLTRAAVMTELNRDYVTASRLA GAGTLRLMFVCVLPNCMAPLIVQATLSFSSAILDAAALGFLGLGVQPPTPEWGTMLASARDYIERAWWVVSLPGLTILLSVLAINLMGDGLRDALDPKLK NAA
BLASTP |
DIAMOND BLASTP (DIAMOND is faster than BLASTP)
Search for conserved domains in this protein at NCBI CDD site
|