Pseudomonas stutzeri ATCC 17588 = LMG 11199, PSTAB_3325

Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown

Gene Ontology

Ontology Accession Term GO Evidence Evidence Ontology (ECO) Code Reference Comments
Molecular Function GO:0043565 sequence-specific DNA binding
ISM
Inferred from Sequence Model
Term mapped from: InterPro:PF02954
 ECO:0000259
match to InterPro signature evidence used in automatic assertion
Biological Process GO:0006355 regulation of transcription, DNA-templated
ISM
Inferred from Sequence Model
Term mapped from: InterPro:PIRSF002097
 ECO:0000259
match to InterPro signature evidence used in automatic assertion
Molecular Function GO:0003677 DNA binding
ISM
Inferred from Sequence Model
Term mapped from: InterPro:PIRSF002097
 ECO:0000259
match to InterPro signature evidence used in automatic assertion

Functional Classifications Manually Assigned by PseudoCAP

Functional Predictions from Interpro

Analysis Accession Description Interpro Accession Interpro Description Amino Acid Start Amino Acid Stop E-value
PIRSF PIRSF002097 DNA-bp_Fis IPR005412 DNA-binding protein Fis 1 92 5.7E-39
SUPERFAMILY SSF46689 Homeodomain-like IPR009057 Homeobox-like domain superfamily 15 91 1.94E-21
PRINTS PR01590 FIS bacterial regulatory protein HTH signature IPR002197 DNA binding HTH domain, Fis-type 55 72 5.9E-10
PRINTS PR01591 DNA-binding protein FIS signature IPR005412 DNA-binding protein Fis 51 63 1.5E-12
Gene3D G3DSA:1.10.10.60 - - - 1 91 3.2E-26
PANTHER PTHR47918 DNA-BINDING PROTEIN FIS - - 2 91 2.0E-36
Pfam PF02954 Bacterial regulatory protein, Fis family IPR002197 DNA binding HTH domain, Fis-type 49 89 1.1E-13
PRINTS PR01591 DNA-binding protein FIS signature IPR005412 DNA-binding protein Fis 36 51 1.5E-12
MobiDBLite mobidb-lite consensus disorder prediction - - 1 20 -
PRINTS PR01591 DNA-binding protein FIS signature IPR005412 DNA-binding protein Fis 20 36 1.5E-12
PRINTS PR01590 FIS bacterial regulatory protein HTH signature IPR002197 DNA binding HTH domain, Fis-type 72 92 5.9E-10

Search for additional functional domains at the NCBI CDD database website. Go to this protein's amino acid sequence and follow the link.