Pseudomonas stutzeri ATCC 17588 = LMG 11199, PSTAB_1135 (mucD)

Gene Ontology

Ontology	Accession	Term	GO Evidence	Evidence Ontology (ECO) Code	Reference	Comments
Molecular Function	GO:0005515	protein binding	ISM Inferred from Sequence Model Term mapped from: InterPro:SM00228	ECO:0000259 match to InterPro signature evidence used in automatic assertion
Biological Process	GO:0006508	proteolysis	ISM Inferred from Sequence Model Term mapped from: InterPro:PF02163	ECO:0000259 match to InterPro signature evidence used in automatic assertion
Molecular Function	GO:0004252	serine-type endopeptidase activity	ISM Inferred from Sequence Model Term mapped from: InterPro:PR00834	ECO:0000259 match to InterPro signature evidence used in automatic assertion

Functional Classifications Manually Assigned by PseudoCAP

Pathways

Database	Xref	Pathway	Version	Evidence	PMID
KEGG	psz01503	Cationic antimicrobial peptide (CAMP) resistance	81.0+/01-23, Jan 17	ECO:0000249 sequence similarity evidence used in automatic assertion
KEGG	psz02020	Two-component system	81.0+/01-23, Jan 17	ECO:0000249 sequence similarity evidence used in automatic assertion

Functional Predictions from Interpro

Analysis	Accession	Description	Interpro Accession	Interpro Description	Amino Acid Start	Amino Acid Stop	E-value
Pfam	PF13365	Trypsin-like peptidase domain	-	-	98	231	2.5E-34
Pfam	PF02163	Peptidase family M50	IPR008915	Peptidase M50	239	389	1.1E-9
PRINTS	PR00834	HtrA/DegQ protease family signature	IPR001940	Peptidase S1C	202	219	1.5E-52
SMART	SM00228	pdz_new	IPR001478	PDZ domain	270	352	2.1E-16
CDD	cd00987	PDZ_serine_protease	-	-	384	469	4.48923E-18
Pfam	PF13180	PDZ domain	IPR001478	PDZ domain	385	465	5.7E-10
Gene3D	G3DSA:2.30.42.10	-	IPR036034	PDZ superfamily	380	473	1.8E-18
Pfam	PF13180	PDZ domain	IPR001478	PDZ domain	272	360	1.5E-16
PRINTS	PR00834	HtrA/DegQ protease family signature	IPR001940	Peptidase S1C	168	192	1.5E-52
FunFam	G3DSA:2.40.10.120:FF:000007	Periplasmic serine endoprotease DegP-like	-	-	30	263	5.9E-96
PRINTS	PR00834	HtrA/DegQ protease family signature	IPR001940	Peptidase S1C	107	119	1.5E-52
Gene3D	G3DSA:2.40.10.120	-	-	-	29	263	5.4E-84
PRINTS	PR00834	HtrA/DegQ protease family signature	IPR001940	Peptidase S1C	310	322	1.5E-52
NCBIfam	TIGR02037	JCVI: Do family serine endopeptidase	IPR011782	Peptidase S1C, Do	30	469	0.0
SMART	SM00228	pdz_new	IPR001478	PDZ domain	383	462	4.9E-11
PRINTS	PR00834	HtrA/DegQ protease family signature	IPR001940	Peptidase S1C	224	241	1.5E-52
SUPERFAMILY	SSF50156	PDZ domain-like	IPR036034	PDZ superfamily	384	471	3.02E-14
Gene3D	G3DSA:2.30.42.10	-	IPR036034	PDZ superfamily	268	370	3.1E-27
PANTHER	PTHR22939	SERINE PROTEASE FAMILY S1C HTRA-RELATED	-	-	29	360	4.9E-99
SUPERFAMILY	SSF50156	PDZ domain-like	IPR036034	PDZ superfamily	228	353	2.23E-27
CDD	cd00987	PDZ_serine_protease	-	-	270	359	2.336E-25
SUPERFAMILY	SSF50494	Trypsin-like serine proteases	IPR009003	Peptidase S1, PA clan	29	261	2.88E-69
PRINTS	PR00834	HtrA/DegQ protease family signature	IPR001940	Peptidase S1C	128	148	1.5E-52

Search for additional functional domains at the NCBI CDD database website. Go to this protein's amino acid sequence and follow the link.