Pseudomonas stutzeri ATCC 17588 = LMG 11199, PSTAB_1052
Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
Gene Ontology
| Ontology | Accession | Term | GO Evidence | Evidence Ontology (ECO) Code | Reference | Comments |
|---|
Functional Classifications Manually Assigned by PseudoCAP
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Pathways
| Database | Xref | Pathway | Version | Evidence | PMID |
|---|---|---|---|---|---|
| KEGG | psz02025 | Biofilm formation - Pseudomonas aeruginosa | 81.0+/01-23, Jan 17 |
ECO:0000249
sequence similarity evidence used in automatic assertion |
Functional Predictions from Interpro
| Analysis | Accession | Description | Interpro Accession | Interpro Description | Amino Acid Start | Amino Acid Stop | E-value |
|---|---|---|---|---|---|---|---|
| FunFam | G3DSA:3.30.70.270:FF:000001 | Diguanylate cyclase domain protein | - | - | 205 | 370 | 1.2E-50 |
| Coils | Coil | Coil | - | - | 192 | 212 | - |
| PANTHER | PTHR45138 | REGULATORY COMPONENTS OF SENSORY TRANSDUCTION SYSTEM | - | - | 160 | 370 | 6.9E-67 |
| Gene3D | G3DSA:3.30.70.270 | - | IPR043128 | Reverse transcriptase/Diguanylate cyclase domain | 196 | 370 | 2.5E-55 |
| NCBIfam | TIGR00254 | JCVI: diguanylate cyclase (GGDEF) domain | IPR000160 | GGDEF domain | 206 | 369 | 4.1E-45 |
| SUPERFAMILY | SSF55073 | Nucleotide cyclase | IPR029787 | Nucleotide cyclase | 215 | 368 | 1.02E-45 |
| SMART | SM00267 | duf1_3 | IPR000160 | GGDEF domain | 199 | 370 | 5.4E-59 |
| CDD | cd01949 | GGDEF | IPR000160 | GGDEF domain | 212 | 367 | 6.46487E-61 |
| Pfam | PF00990 | Diguanylate cyclase, GGDEF domain | IPR000160 | GGDEF domain | 210 | 366 | 6.8E-45 |
Search for additional functional domains at the NCBI CDD database website. Go to this protein's amino acid sequence and follow the link.