Pseudomonas stutzeri ATCC 17588 = LMG 11199, PSTAB_0685 (rplF)

Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown

Gene Ontology

Ontology Accession Term GO Evidence Evidence Ontology (ECO) Code Reference Comments
Cellular Component GO:0005840 ribosome
ISM
Inferred from Sequence Model
Term mapped from: InterPro:SSF56053
 ECO:0000259
match to InterPro signature evidence used in automatic assertion
Molecular Function GO:0003735 structural constituent of ribosome
ISM
Inferred from Sequence Model
Term mapped from: InterPro:SSF56053
 ECO:0000259
match to InterPro signature evidence used in automatic assertion
Biological Process GO:0006412 translation
ISM
Inferred from Sequence Model
Term mapped from: InterPro:SSF56053
 ECO:0000259
match to InterPro signature evidence used in automatic assertion
Molecular Function GO:0019843 rRNA binding
ISM
Inferred from Sequence Model
Term mapped from: InterPro:SSF56053
 ECO:0000259
match to InterPro signature evidence used in automatic assertion

Functional Classifications Manually Assigned by PseudoCAP

Pathways

Database Xref Pathway Version Evidence PMID
KEGG psz03010 Ribosome 81.0+/01-23, Jan 17 ECO:0000249
sequence similarity evidence used in automatic assertion

Functional Predictions from Interpro

Analysis Accession Description Interpro Accession Interpro Description Amino Acid Start Amino Acid Stop E-value
Gene3D G3DSA:3.90.930.12 - IPR036789 Large ribosomal subunit protein uL6-like, alpha-beta domain superfamily 65 159 1.1E-39
PANTHER PTHR11655 60S/50S RIBOSOMAL PROTEIN L6/L9 IPR000702 Large ribosomal subunit protein uL6-like 4 159 7.7E-42
Pfam PF00347 Ribosomal protein L6 IPR020040 Large ribosomal subunit protein uL6, alpha-beta domain 72 146 5.8E-19
SUPERFAMILY SSF56053 Ribosomal protein L6 IPR036789 Large ribosomal subunit protein uL6-like, alpha-beta domain superfamily 65 159 3.74E-36
PRINTS PR00059 Ribosomal protein L6 signature IPR019906 Large ribosomal subunit protein uL6, bacterial-type 53 78 8.6E-34
PRINTS PR00059 Ribosomal protein L6 signature IPR019906 Large ribosomal subunit protein uL6, bacterial-type 81 97 8.6E-34
PIRSF PIRSF002162 RPL6p_RPL6a_RPL9e_RPL9o IPR000702 Large ribosomal subunit protein uL6-like 1 159 1.4E-43
PRINTS PR00059 Ribosomal protein L6 signature IPR019906 Large ribosomal subunit protein uL6, bacterial-type 123 144 8.6E-34
Gene3D G3DSA:3.90.930.12 - IPR036789 Large ribosomal subunit protein uL6-like, alpha-beta domain superfamily 1 64 1.3E-19
SUPERFAMILY SSF56053 Ribosomal protein L6 IPR036789 Large ribosomal subunit protein uL6-like, alpha-beta domain superfamily 2 64 1.4E-15
FunFam G3DSA:3.90.930.12:FF:000001 50S ribosomal protein L6 - - 65 159 3.7E-44
Pfam PF00347 Ribosomal protein L6 IPR020040 Large ribosomal subunit protein uL6, alpha-beta domain 3 64 6.7E-14
NCBIfam TIGR03654 JCVI: 50S ribosomal protein L6 IPR019906 Large ribosomal subunit protein uL6, bacterial-type 2 158 4.0E-67

Search for additional functional domains at the NCBI CDD database website. Go to this protein's amino acid sequence and follow the link.