Pseudomonas stutzeri ATCC 17588 = LMG 11199, PSTAB_0535
Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
Sequence Data
| Strain | Pseudomonas stutzeri ATCC 17588 = LMG 11199 chromosome, complete genome. [Details] | |
| DNA Sequence Upstream of Gene |
GGAAAGTGGACACGGTAAGGCCGCGCGCCTCGCTGCCCTTGAGCAGGGTGCCGACGCGCTCCTTCATCTCCCGCGCCGCCTTGTTGGTGAAGGTCATGGC GACGATGTGACGGGCCTGGATGCCGCAGTTCTGCACCAGGTGGGCGATCTTGCGGGTGATCACGCTGGTCTTGCCGGAGCCGGCACCGGCGAGCACCAGC AGGGGGCCGCCGACGTAGTTCACGGCTTCCTGCTGCCGAGGATTGAGTCGGGACATGTTGTTCAGGTCGTTCGAAACGGGGGCGCGAGTTTAACAGGCCG AAAGGGTGATGCAGGCGCGTTACAGACGCAATAAAACGCCGGTCGTCGCGCGTGGGGCTTGGCTAATGGCAAGAATCGATTAGTCTTGTCGCGCTGCAGG ATGCTGGGGTGGTTGCACAGGGACTGGTGGGATCGGAGACCCTTTGGTGTCTTCAACAGCTCAAGAGTCCGGAGGCCGCTTGCCAGCGCCTGCCCAACCC
|
|
| DNA Sequence for Gene |
>PSTAB_0535
ATGCCATTGTTGCTGTTGGCGCATCGCCCAGACTGGGCGGTGCGGCTGCGCGCCTGCCTGCAGGGTTCGGCCCACGCCGAACAGCTGGTCGTGGCGACGG ACTGGCAAACCGTCAGCCAGCAGCTCGAATCTCCCTGTCTGGTCCTGGCGACGCCGCAATGCCGGCCCGCACCCGGGCGCTTTCCCTGGCCGCTGATCCT GCTGCTCGACGAGGAGCCGGAAGAAACCCCGGAAGGTGCGGTCGACTGGCTGGTGGCCGACCAGCTCAGCGCCGAGGTGCTGCGCCGTTGTCTGCGCTAC GTGCGCGAGCGCTGCAACCTGCAGGGCACCCTGCAGAAGCTGGCGGTGCGCGACCCGCACACCGGCATCGCCAATCGTCAGGGCTTCCAGGCGCAGCTGC TCGACGCCCTGAGCGAGCACGACGGTCATGGCCTGGAGCTCGGCTACCTGGACCTGGACAATTTCCGCCACGTCAACGACGCCCTCGGCCACGATGCCGG AGATCGGCTGATCCTGCAGGTGGTTGCCCGGCTCAAGGCGCAGCTGGAAGTGGGCGATCTGCTGGCGCGGCTGGGCGGCGACGAGTTCGCCTTGCTGCTC GACACCCGTGACGATGCCGGACGCGCCGATGCGATCGCCGATCGCATCGTCGAAGCGTTGGCCGAGCCCTACTGGGTGGACGGCGAAAGCCTGATGCTCG GCTGCAGCCTCGGGCTGGCGCGAGCCAGCGCCGGCACCTCGGCCGATGCGCTGCTCTGGCATGCGCAACTGGCGATGCGTCAGGCCAAGGCCAGCCAGGG CTGCACCTGGTGCCTGTACGACGAGCACGTCAGCCGCAGTGCCCGCAGCCTGGCCGACCAGGAGGGCGAGCTGCGCCGCGCGCTGCGCCGTGGTGAGCTG GAGCTGCACTACCAGCCGCGGCTGTGTCTGGACACGGGCCGCGTGGTCGGCATCGAGGCGCTGGTGCGTTGGCTGCATCCCGAACGCGGTCTGCTCGGGC CGGACGCCTTCATTCCCATGGCCGAGGAAAGCGGCCTGATCGTGCCGCTCGGCTACTGGGTCATCGCCCACGCCCTGCGCGACCTGCAGAGCCTGCACGA GCAGGGTGCGGACTCGCTGCACATGGCGGTCAACCTGTCGTTCCGGCAGTTCCAGGACAGCCAGTTGCTGCCGACACTGACGCGGCTGATCGACGAGCGC GCCATCGACCCGCACTGGCTCGAGTTCGAGCTTACCGAAACCGCCGTCATGCGCCGCAGCGAGCAGGTGCAGACCGCCATGCAGGCGCTTGGCCAGCTGG GCGTGCGCTTCTCGCTGGATGACTTCGGCACCGGCTTTTCCTCCTTCGTGCACCTGTCCAACCTGCCGATCACCCTGCTGAAGGTCGACAAGAGTTTCGT CGCCGGGATGATCGCGCGCCCCGAGAAGATGCAGCTGGTACGGGCAATGATCGGCCTGGCCCGCGAACTGGAGCTGCAAGTGGTCGCCGAGGGGGTTGAA ACCGCTGAGCAACTGGAGCTGCTGCGCCAGTTTGGTGCGCAGCAGGTGCAGGGCTATCTGGTCAGCCAGCCGTTGCCGCTGGCCGAGCTGATGAGCTTCA TGAACGCCGAGCGCCAGGCTGCGGGCCTGACGCACTGA
BLASTN Search
|
DIAMOND BLASTX Search (DIAMOND is faster than BLASTX)
|
|
| DNA Sequence Downstream of Gene |
GCTGAAGCGCTCGGCGGAACCCGCTCCGCCTCAGCGGACCATGTGCAGGAAGTGCATGTGCTTCTCGTACTGGCCGAGGATGTCGCCGATCACGTCTTCA CGGCTCCAGCCCATCACGTCGTAATCCTGCCCGCCTTCCTTGAGATGCACCTCGGCGCGGAAGTACTTGCGCTCCTCGCGCTCGTCGTCCTCGCTGGTGG CGACGAAACTCGGCATGGCGTAGGCCCGCGGGCGCACCTCGTAGATGAAGTCCGGCTCGCCTTCGTGGGTGATTTCGAAGCGCAAGCGACGATCGTCACC TTCGCTGATCTCCACCGCATAGCCCTGCTTGCGCATTTCCTCGGCGATGTCTTCGTAGGCCGGACGCACCACTTCGGTGATGAAGCGCACCACATGGGCG CGTCGCGGGAACAGCATCAGCGTACGCAGGCGACGTTGCCAGCCACCGGCGCTGCGCGGTGCGCTGGGTGACGTGCTCAGGGCCTGGTAGCGCAGCCCCT
|
|
| Amino Acid Sequence |
>GGDEF domain-containing protein
MPLLLLAHRPDWAVRLRACLQGSAHAEQLVVATDWQTVSQQLESPCLVLATPQCRPAPGRFPWPLILLLDEEPEETPEGAVDWLVADQLSAEVLRRCLRY VRERCNLQGTLQKLAVRDPHTGIANRQGFQAQLLDALSEHDGHGLELGYLDLDNFRHVNDALGHDAGDRLILQVVARLKAQLEVGDLLARLGGDEFALLL DTRDDAGRADAIADRIVEALAEPYWVDGESLMLGCSLGLARASAGTSADALLWHAQLAMRQAKASQGCTWCLYDEHVSRSARSLADQEGELRRALRRGEL ELHYQPRLCLDTGRVVGIEALVRWLHPERGLLGPDAFIPMAEESGLIVPLGYWVIAHALRDLQSLHEQGADSLHMAVNLSFRQFQDSQLLPTLTRLIDER AIDPHWLEFELTETAVMRRSEQVQTAMQALGQLGVRFSLDDFGTGFSSFVHLSNLPITLLKVDKSFVAGMIARPEKMQLVRAMIGLARELELQVVAEGVE TAEQLELLRQFGAQQVQGYLVSQPLPLAELMSFMNAERQAAGLTH
BLASTP |
DIAMOND BLASTP (DIAMOND is faster than BLASTP)
Search for conserved domains in this protein at NCBI CDD site
|