Strain | Pseudomonas stutzeri ATCC 17588 = LMG 11199 chromosome, complete genome. [Details] | |
DNA Sequence Upstream of Gene |
ACGCGGCCAGGCGCGGCAACAGCCACTTGGTGGCGAATGAGGGCATTACGCGCACTTTCAGGGTGCCTGCCAGCGCCTCGTCCCCAATCTGGTGCAGGGT CGCGCCAATCAGACTCAAGGCCTCCGCCACCCCGGCGTAGAGGCGCTCGCCATGGCTGGTCAGGCGCAGGCCGCGCGGCAGGCGATGGAACAGCGGGTAG CCGAGGTGCTGTTCGAGGGCCTGGATCTTCTGACTCACCGCACTTTGGGTGAGGAACAGGTCCTGGGAGGCGCGGGTAAAGCTCAGGTGGCGGGCAGCGG CCTCGAAGTAGCGCAGACCTTCGAGAGACGGCAAGGCACGGGATGGGGGCATGGCAATCACTCTGTTGGATACGCCCATCCCAGCAGGATTCGTGCCGGC ATTAGCCGGCCTAATGGCTCGCCGTTAGAAAAAGCCGTTTGTGGGGGAAATCGGCACTGAACATGCTTGAGCCATCGCCAACTCCCTTAAGGACCGTCCC
|
|
DNA Sequence for Gene |
>PSTAB_0119
ATGAAAGCGTTTCGCTCCCTGTTTGCTCCCCTGCTGCTCGGTGCCCTACTGCCACTGCACGCCGCCACTGCCCATGCCGACCTGCTCGCCGACATCAGGC AGCGTGGTGAGATCGTGATCGCCACCGAGGCGCGCTATGCGCCTTTTGAAATGCTGGAGAACGGCAAGATCGTCGGCTACGGCAAGGACATCCTCGACGA GATCATGAAGGAGCTGCCGGGGGTCACGCTCAAACAGCTCGACGTGCCGTTCCAAGGCATCCTGCCAGGGCTGTCCAGCCAGCGCTTCGACTTCGTCGCC ACCTCGCTGACCATTACCCAGGCACGCACGGAGAGCTTCGCCTTCACCGTGCCGTTCGCCACCGCCAGCGTGGCGGTGCTCAAGCGCAAGGGTGATGAGC GCATCGCCAGCGCCGGCGATCTGGTCGGCAAGGTGGTCGGCAGCCAGTCCGGCGCGCCGCAGATCGAGGTGCTCAAGGCCTACGAGAACGAGGTGCTCAA GCCGCAGCACGGCGCCGGGGTGAAGGAGATCAAGGCGTTCATGGACTACAACGAGGCCTACGCCGCCCTCGCCTCGCGCCGCGTCGATGCCGTGGTGCAG TCGCTACCCAACCTGGCGCCGCTGGTCAAGGAGCGTGCCGACGTGTTCGAGATCGTCCAGCCGCCCTTCGGTCCGGCCACCTACTACGCCTGGGCCGGGC GCAAGGATGCCGACAGCGCTTCGCTGGTGCAGTTCTTCAGTGACGGCATCGCCCGCCTGAACCAGAGCGGCAAGCTGGCCGAGCTGCAGCGCAAGTGGTT CGGCTTCGAGATGCCGGTGCCAGCCGACCAGGTGCCCACCCCGGCCAACTGA
BLASTN Search
|
DIAMOND BLASTX Search (DIAMOND is faster than BLASTX)
|
|
DNA Sequence Downstream of Gene |
TCGCCATCCATCGCCAGCACGGGACCACGCCATGTTCGACTTCACTGCCGTCATTCCCCACCTGCCGCAGCTGCTGGTCGGTCTGGCCAGCACCCTGCTG GTCTCGCTCAGTGCCATCGCCCTGGGGCTGGTGCTCGGCTGGGCGATCTGCCTGGGCCTGACCGGCCACCGAGCCTGGCTGCGTCGCGTCTGTGCGATCT ATGTCAGCTTTTTCCGCGGCACGCCGCTGCTGGTGCAGCTGATCCTGGTGTTCTACGCCCTGCCGGCGGTAGGTATCAGCCTGCCGCCGTTGGCCGCCGC GGTGCTGGCGCTGACCCTCAACAGCGCCGCCTTCCAAGGCGAGATCCTGCGCTCGGGATTCCAGATGCTGCCCAAGGGGCAACTCGAAGCGGCGCGCGAC CTCGGCCTATCGCCGCTGCAGACCTTGCTGCATGTGCAGATCCCTCAGGTACTGCGCAGCATGCTGCCGGCGCTGACCAACGAGACCATCGACATCATCA
|
|
Amino Acid Sequence |
>family 3 extracellular solute-binding protein
MKAFRSLFAPLLLGALLPLHAATAHADLLADIRQRGEIVIATEARYAPFEMLENGKIVGYGKDILDEIMKELPGVTLKQLDVPFQGILPGLSSQRFDFVA TSLTITQARTESFAFTVPFATASVAVLKRKGDERIASAGDLVGKVVGSQSGAPQIEVLKAYENEVLKPQHGAGVKEIKAFMDYNEAYAALASRRVDAVVQ SLPNLAPLVKERADVFEIVQPPFGPATYYAWAGRKDADSASLVQFFSDGIARLNQSGKLAELQRKWFGFEMPVPADQVPTPAN
BLASTP |
DIAMOND BLASTP (DIAMOND is faster than BLASTP)
Search for conserved domains in this protein at NCBI CDD site
|