Pseudomonas stutzeri A1501, PST_3938 (oprM)
Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
Sequence Data
| Strain | Pseudomonas stutzeri A1501 chromosome, complete genome. [Details] | |
| DNA Sequence Upstream of Gene |
CTGCTGGTGGTGTTCCTCTGCCTGGCGGCCCTGTACGAGAGCTGGTCGATTCCGTTCTCGGTCATGCTGGTGGTGCCGCTGGGTATTGTTGGGGCGCTTG CCTTCACGCTGGCGCGTGGATTGTCCAACGAGGTGTTCTTCCAGGTCGGTCTGGTCACCACTATTGGCCTGTCGGCGCGTAACGCGATCCTCATCGTCGA GTTCGCCAAAGCGCTGCACGAGCAGGGCATGAGCTATGCGGACGCCGCCTTGCGTGCCTGCCGTATGCGTCTGCGTCCGATCATCATGACCTCCCTGGCG TTCATTCTCGGCGTGGTGCCGCTCGCCATCGCCTCCGGCGCGGGTGCCGGCAGCAAGCACGCCATCGGTACCGGGGTGATCGGCGGCATGCTCACCGCGG CGGTGCTGGCAATCTTCTGGATTCCGTTGTTCTACGTGATGATCTGCTCGTTCTTCGATCGCACGGATTCCGCCAGCGAAGGTGTGAAGGAGGATTCGCT
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| DNA Sequence for Gene |
>PST_3938
|oprM
GTGAACAAGTCTCTGTTGAGTCTCGCGCTCGTGGCGGCGCTGAGTGGCTGCTCGCTGATTCCGGAGTATCAGCGTCCGGATGCGCCGGCACCAGCCGACT GGCCGCAGGGCGAAGCCTATTCGAAGGCATCCCCCGAGGCTCGGGCGCAGGCCCTTGGCTGGCGCCAGTTCTTCCGTGATCCGGCGCTGCAGCAGCTGAT CGAGGTCGCGCTGGAGAACAACCGCGACCTGCGCGTCGCGGCGCTGAACGTCGATGCCTATCGCGCGCTATACCGCGTGCAGCGCGCCGATGTGTTGCCG GCGGTGAGCGCCGACGGCGCGGGGACGCGCAGCCGTACACCGGGCGATCTGAGCATGAGCGGCGAGCCGGCCATCAGCAGTCAGTACAGTGCCACCTTCG GCGTGTCCTGGGAACTGGATCTGTTCGGCCGCCTGCGCAGCCTGCGCGACCAGGCGCTGGAAGAGTTCTTCGCCAGCGAGGCCGCGCAGCGCAGCACGCA GATCAGCCTGATTGCCAGTGTCGCCAATGCCTGGCTGACGCTGCAGGCCGATCAAGCGCTGCTGCAGGTCACCCGCGATACGCTCAAGACCTACGAGGAA AGCCTGGGCCTGACTCAGCGCAGCTTCGATGTCGGTGTCGCCTCGGCGCTGGAGTTGCGCCAGGCGCGCAGTGCAGTGGACAGTGCGCGGGTGAGTATCG AGCAGTACACCCGTCTGGTGGCGCAGGACCGCAATGCCCTGACCCTGCTACTGGGCCAGAGCCTGCCGGCCGGTCTGCCGAGCGGCGAAGGTCTCGAGCG CACCCAGCTGGCGACGTTGCCGGTCGGGTTGCCCTCGGACCTGCTGCAGCAACGCCCGGATATTCTCCAGGCGGAGTACCAGCTGCGTGCGGTCAATGCC AGCATCGGCGCCGCGCGTGCGGCCTTCTTCCCGCGCATCAGCCTGACCGGCGCGGCAGGGACCGCCAGCAGCGAGCTGTCCGGTCTGTTCGACGGCGGTT CCGGCTACTGGAGCTTCTCACCGAGCATCAGCGTGCCGATCTTCAACGCCGGCCAGCTTCGGGCCAACCTGGACTACGCGCAGATCAGCAAGAACATCCA GGTGGCGCAATACGAGCAGGCCATCCAGACGGCGTTCCGCGAGGTCGCCGACGGGCTCGCCGCCCAGGCCACGTATGTGCGCCAGGTGCAGGCCCAGCGT GATCTGCTGCAGACCAGCGAGGATTATTACAACCTCGCCGAGCGTCGCTATCGCACCGGTGTCGACAGCTACCTGACCGTGCTCGACGCGCAGCGTCAGC TGTTCAGCGTGCAGCAGCAGCTGATCAGCGACCGTCTGGCGCAGCTGACCAGCGAGGTGAACCTGTTCAAGGCGCTGGGTGGCGGCTGGCAGGAGACCAT GCAGGCCACCCCCGAGGGCTGA
BLASTN Search
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DIAMOND BLASTX Search (DIAMOND is faster than BLASTX)
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| DNA Sequence Downstream of Gene |
GGATCATGGCGACGCAGCCCTGAAAAGGCCGTCGCCGTGCTGCAGATGCGAAAACGCCGCCCAATGGGCGGCGTTTTCGTTCCGGCGCGGGTCAGGCTTC GCGATTGCGCGTCAGCAGGGCCGGTTTCTCGCCACGCGGGCGGGACGGCAACTGCTCGAGCTGCTCCAGGCTGGGCAGACGATCGATCTTCGATTCCTTG TGAATGATCACCGGCTGCTTCTCGCGCGGCTTGGCCATTTCCTGACGCGTGACGACCGGCTCATCGATGCGGCGACCCTCGTTCTTGCGCCGCGGCTGAC CATTGCGTGGCTGGCCGTTGCGCGCAGCCTGGCCCTGGCCAGCGGCGGGACGCTTGCCCTTGCTTCCCGCTGCGCCGCCACCGCCGTTGCGGGCAGCTCC AGCTCCAGCTCCAGCTGCACGCAGTGCGGAGCCCGGCTGGGCCTGACCGCTGGTACGGCGTCCGCGGTTCTGCTTGTTCTGATAGGGGCTGACGTAATCG
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| Amino Acid Sequence |
>outer membrane protein OprM precursor
MNKSLLSLALVAALSGCSLIPEYQRPDAPAPADWPQGEAYSKASPEARAQALGWRQFFRDPALQQLIEVALENNRDLRVAALNVDAYRALYRVQRADVLP AVSADGAGTRSRTPGDLSMSGEPAISSQYSATFGVSWELDLFGRLRSLRDQALEEFFASEAAQRSTQISLIASVANAWLTLQADQALLQVTRDTLKTYEE SLGLTQRSFDVGVASALELRQARSAVDSARVSIEQYTRLVAQDRNALTLLLGQSLPAGLPSGEGLERTQLATLPVGLPSDLLQQRPDILQAEYQLRAVNA SIGAARAAFFPRISLTGAAGTASSELSGLFDGGSGYWSFSPSISVPIFNAGQLRANLDYAQISKNIQVAQYEQAIQTAFREVADGLAAQATYVRQVQAQR DLLQTSEDYYNLAERRYRTGVDSYLTVLDAQRQLFSVQQQLISDRLAQLTSEVNLFKALGGGWQETMQATPEG
BLASTP |
DIAMOND BLASTP (DIAMOND is faster than BLASTP)
Search for conserved domains in this protein at NCBI CDD site
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