Pseudomonas stutzeri A1501, PST_3308 (truB)

Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
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Gene Ontology

Ontology Accession Term GO Evidence Evidence Ontology (ECO) Code Reference Comments
Biological Process GO:0006396 RNA processing
ISM
Inferred from Sequence Model
Term mapped from: InterPro:PF01509
 ECO:0000259
match to InterPro signature evidence used in automatic assertion
Molecular Function GO:0009982 pseudouridine synthase activity
ISM
Inferred from Sequence Model
Term mapped from: InterPro:SSF55120
 ECO:0000259
match to InterPro signature evidence used in automatic assertion
Molecular Function GO:0003723 RNA binding
ISM
Inferred from Sequence Model
Term mapped from: InterPro:SSF55120
 ECO:0000259
match to InterPro signature evidence used in automatic assertion
Biological Process GO:0001522 pseudouridine synthesis
ISM
Inferred from Sequence Model
Term mapped from: InterPro:SSF55120
 ECO:0000259
match to InterPro signature evidence used in automatic assertion
Biological Process GO:0009451 RNA modification
ISM
Inferred from Sequence Model
Term mapped from: InterPro:SSF55120
 ECO:0000259
match to InterPro signature evidence used in automatic assertion

Functional Classifications Manually Assigned by PseudoCAP

Functional Predictions from Interpro

Analysis Accession Description Interpro Accession Interpro Description Amino Acid Start Amino Acid Stop E-value
SUPERFAMILY SSF55120 Pseudouridine synthase IPR020103 Pseudouridine synthase, catalytic domain superfamily 11 222 2.01E-83
Pfam PF01509 TruB family pseudouridylate synthase (N terminal domain) IPR002501 Pseudouridine synthase II, N-terminal 33 180 2.0E-58
FunFam G3DSA:2.30.130.10:FF:000012 tRNA pseudouridine synthase B - - 244 304 1.4E-36
Pfam PF16198 tRNA pseudouridylate synthase B C-terminal domain IPR032819 tRNA pseudouridylate synthase B, C-terminal 181 242 1.3E-21
Gene3D G3DSA:3.30.2350.10 Pseudouridine synthase - - 2 243 4.0E-93
PANTHER PTHR13767 TRNA-PSEUDOURIDINE SYNTHASE IPR014780 tRNA pseudouridine synthase II, TruB 9 226 3.0E-77
Hamap MF_01080 tRNA pseudouridine synthase B [truB]. IPR014780 tRNA pseudouridine synthase II, TruB 11 302 19.592762
Gene3D G3DSA:2.30.130.10 PUA domain IPR036974 PUA domain superfamily 244 304 1.0E-22
FunFam G3DSA:3.30.2350.10:FF:000011 tRNA pseudouridine synthase B - - 11 242 4.3E-84
NCBIfam TIGR00431 JCVI: tRNA pseudouridine(55) synthase TruB IPR014780 tRNA pseudouridine synthase II, TruB 12 219 1.9E-80
SUPERFAMILY SSF88697 PUA domain-like IPR015947 PUA-like superfamily 245 303 2.82E-15
Pfam PF09157 Pseudouridine synthase II TruB, C-terminal IPR015240 tRNA pseudouridine synthase II, TruB, subfamily 1, C-terminal 246 302 3.5E-21
CDD cd02573 PseudoU_synth_EcTruB IPR014780 tRNA pseudouridine synthase II, TruB 13 222 2.46136E-127
CDD cd21152 PUA_TruB_bacterial - - 243 302 1.39709E-22

Search for additional functional domains at the NCBI CDD database website. Go to this protein's amino acid sequence and follow the link.