Pseudomonas stutzeri A1501, PST_3308 (truB)

Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
View in JBrowse

Gene Feature Overview

Strain Pseudomonas stutzeri A1501
GCF_000013785.1|latest
Locus Tag
PST_3308
Name
truB
Replicon chromosome
Genomic location 3581245 - 3582162 (- strand)

Cross-References

RefSeq YP_001173781.1
GI 146283628
Entrez 5096269
INSDC ABP80939.1
NCBI Locus Tag PST_3308
UniParc UPI00014FEFE5
UniProtKB Acc A4VPN8
UniProtKB ID TRUB_PSEU5
UniRef100 UniRef100_A4VPN8
UniRef50 UniRef50_Q8XZV4
UniRef90 UniRef90_A4VPN8

Product

Feature Type CDS
Coding Frame 1
Product Name
tRNA pseudouridine synthase B
Synonyms
Evidence for Translation
Charge (pH 7) -1.64
Kyte-Doolittle Hydrophobicity Value -0.258
Molecular Weight (kDa) 33.5
Isoelectric Point (pI) 6.53

Subcellular localization

Individual Mappings
Localization Confidence PMID
Cytoplasmic Class 3
Additional evidence for subcellular localization

AlphaFold 2 Protein Structure Predictions

Protein structure predictions using a neural network model developed by DeepMind. If a UniProtKB accession is associated with this protein, a search link will be provided below.

Look for predicted 3D structure in AlphaFold DB: Search

Pathogen Association Analysis

Results
Common
Found in both pathogen and nonpathogenic strains
Hits to this gene were found in 658 genera

Orthologs/Comparative Genomics

Pseudomonas Ortholog Database View orthologs at Pseudomonas Ortholog Database
Pseudomonas Ortholog Group POG004387 (536 members)
Putative Inparalogs None Found

Interactions

STRING database Search for predicted protein-protein interactions using:
Search term: PST_3308
Search term: truB

Human Homologs

Ensembl 110, assembly GRCh38.p14
TruB pseudouridine synthase family member 1 [Source:HGNC Symbol;Acc:HGNC:16060]
E-value: 6.8e-36
Percent Identity: 40.5

References

No references are associated with this feature.