Pseudomonas stutzeri A1501, PST_2863

Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
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Gene Ontology

Ontology Accession Term GO Evidence Evidence Ontology (ECO) Code Reference Comments
Biological Process GO:0045892 negative regulation of transcription, DNA-templated
ISM
Inferred from Sequence Model
Term mapped from: InterPro:PF08362
 ECO:0000259
match to InterPro signature evidence used in automatic assertion
Molecular Function GO:0003677 DNA binding
ISM
Inferred from Sequence Model
Term mapped from: InterPro:PF00440
 ECO:0000259
match to InterPro signature evidence used in automatic assertion

Functional Classifications Manually Assigned by PseudoCAP

Functional Predictions from Interpro

Analysis Accession Description Interpro Accession Interpro Description Amino Acid Start Amino Acid Stop E-value
Pfam PF08362 YcdC-like protein, C-terminal region IPR013573 Transcription regulator YcdC, C-terminal 31 170 1.6E-51
Gene3D G3DSA:1.10.357.10 Tetracycline Repressor, domain 2 - - 30 169 2.8E-47
SUPERFAMILY SSF46689 Homeodomain-like IPR009057 Homeobox-like domain superfamily 1 51 5.64E-9
Pfam PF00440 Bacterial regulatory proteins, tetR family IPR001647 DNA-binding HTH domain, TetR-type 1 29 1.9E-5
SUPERFAMILY SSF48498 Tetracyclin repressor-like, C-terminal domain IPR036271 Tetracyclin repressor-like, C-terminal domain superfamily 47 170 1.91E-38
PANTHER PTHR30328 TRANSCRIPTIONAL REPRESSOR - - 1 146 3.6E-9
Gene3D G3DSA:1.10.10.60 - - - 1 29 8.0E-7

Search for additional functional domains at the NCBI CDD database website. Go to this protein's amino acid sequence and follow the link.