Pseudomonas aeruginosa AZPAE13877, NQ45_RS07765
Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
Sequence Data
| Strain | Pseudomonas aeruginosa strain AZPAE13877 AZPAE13877_contig_9, whole genome shotgun sequence. [Details] | |
| DNA Sequence Upstream of Gene |
ATATGCGGCGTTTTTTTTTGCCTTCCTGACCGTTCGGACAATTCTTGCAGAATATGTAAAAGACTTTCGTTGGATATCGGGTTTTTCCGATAGTGGCAAA AAAATATAATCGCGCCAGCTCAATGGATAATTGTCGCTGGCTGTCGACGATATTCGTTCTGTCTTCATCGATCTCGCCATGCAAGAGCGGGACGTGGAAA GCCTAAAGCCCGATGAGTCGAAGAGACTTTCAATAGAAGAGTCCGACTGCGTTCCAGCCGGTTTCCAGTGTCCGGAAATACACTGGCAAGACTTCCCGAC GCCGAACTTTGATTGCTCCTATTCGACGTCTTCTCAAGGCCGCTGATACCAGCGGCCTTTTTTTTCGGGTTGCGCCCGGCTGGGCGCCCCATGGGAGCGA TCGCCCGCGCGACGCCAGCAGAAGCGTCGCCGGGAACGACACCACAACACGCTTTCCGGCCTTGCCGGATTTCACCACGCTGTAAGAAGGAGCAACCGCA
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| DNA Sequence for Gene |
>NQ45_RS07765
ATGAGGAATCTGTTCGCCTTGACGCCGATGGCGCTGGCGCTGTGCACCGCGTCCGCCGCCTGGGCCGATGAGGGGGAAGCCAAAGAAGGCTTCATCGAAG GCTCCAGCCTCCAATTGCTGACCCGCAACTACTACTTCAACCATGACCGCCGGCACGCTTCCGGGCACGACAGCAAGGAATGGGCGCAAGGCTTCATCGC CACCTTTCAGTCCGGCTACACGCCCGGCGTGGTCGGCTTCGGCGTCGACGCCTACGGCATGCTCGGGCTGAAGCTCGACGGCGGCGGCGGTACCGGCGGC ACCAGCATCCTGCCGATCACCGCGCCGAGCAAGGAAGGCTACGAATCCGGCAAGGCGCCCGATGAGTTCTCCAGTGGCGGGGCGGCGCTGAAGATCCGCG CCTTCGACACCGAGCTGAAGCTGGGCGACCAGTTCCTCAGCAACCCGGTGGTCGCCGGCGGCGAGTCGCGCATGCTGCCGCAGACCTTCCGCGGTGTGAG CCTGACCAACAACAGTTTCGAGGACCTGACCCTCACGGCTGGCCAGGTCAGTTTCACCAAGTACTACAACCAGAGTGGCCACCGTCGCCTCGGCTCGTAC TACGGCGAACTGCCGGGCGACCGCGACAGCCATCATCTCAGCTGGCTGGGCGGCACCTGGGGCGGCATCGAGGGCTTCACCAGCAGCCTGTACGCCGCCG AACTGCAGAACGTCTGGAAGCAGTACTACGCCGACGTCGACTACACCTACGAGATCGACGACAACTGGTCGCTGAACCCCGGCGCGCACTACTACAAGAC CGTCGACAGCGGCGACTCGTTGCTCGGCCGGATCGACAACAACACCTACAGCCTGCATTTCGCGGTCGGCTACAGGCAGCACACCGTCACCGCGGTGCTG CAGAAGGTCAACGGCAATACGCCGTTCGACTACATCAACCAGGGCGACAGCATCTTCCTCGACAACTCGCAGCAGTATTCCGACTTCAACGGTCCCAACG AGAAGTCCTGGAAGCTGCAATACGACTACGACTTCGTCGCCCTCGGCCTACCCGGCCTGAGCGCCTCGGCCTCGTACTCGCGCGGCAAGCTGGACCTGAC CCGGGTCGATCCGGACAGCCCCGGCTACGGCGGCTGGTACAGCGCCGACGGCAAGAACGCCAAGCACTGGGAACGCGACCTCGACCTGCAGTACGTGGTC CAGGGCGGTCCGGCCAAGGACCTCTCGCTACGCCTGCGCTGGGCCACCCACCGCGGCACCGGCGGCTACAGCGCGGTGGACAACGACATCGACGAATACC GGGTGATCGTCGACTATCCCATCGACGTCTTCTGA
BLASTN Search
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DIAMOND BLASTX Search (DIAMOND is faster than BLASTX)
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| DNA Sequence Downstream of Gene |
GCCCCGCGCGCTGGGCCCTTCGCCGGGCTCAGCGCTGGCGGAACAGTTCGCCGGGAGTGAAGCCGAAGAGTCCCTTGAAGGCGGCGATATAGGCCGAGGT CGAGTCGTAGCCGCTGTCCAGGGCGGCGCCGGTGACGCTGTCGCCGGCCTCCAGCGCGTTGAGCGAGGCGAGCAGGCGCTGGCGTTGGCGCCAGAGCCGG TAGTTCATCCCGGTCTCGCGCTGGAACAGGCGCGACAGGGTCTTTTCCGAGGTGCCCAGGCGCTGCGCCCAGTCGCCCATGGTCAGGCTCTGGGTCGGTT CGTCGATCAGTGCCTGGCACAGCCGCAGCAGGCGCGGCTCGCGCGGCATCGGCAGGGAGAAGGCGACCTCCGGCAGCAGCCGCAACTGGTCCAGCAGCAC CTGCACCAGCCGCGATTCGGCGCTGTCGCCCTCCGGGTAGTCCACCGGCAACTCGCAGAAACTCTTGATCAGCTCGCGCGCCAGCGGCGTCACCTCCAGC
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| Amino Acid Sequence |
>porin
MRNLFALTPMALALCTASAAWADEGEAKEGFIEGSSLQLLTRNYYFNHDRRHASGHDSKEWAQGFIATFQSGYTPGVVGFGVDAYGMLGLKLDGGGGTGG TSILPITAPSKEGYESGKAPDEFSSGGAALKIRAFDTELKLGDQFLSNPVVAGGESRMLPQTFRGVSLTNNSFEDLTLTAGQVSFTKYYNQSGHRRLGSY YGELPGDRDSHHLSWLGGTWGGIEGFTSSLYAAELQNVWKQYYADVDYTYEIDDNWSLNPGAHYYKTVDSGDSLLGRIDNNTYSLHFAVGYRQHTVTAVL QKVNGNTPFDYINQGDSIFLDNSQQYSDFNGPNEKSWKLQYDYDFVALGLPGLSASASYSRGKLDLTRVDPDSPGYGGWYSADGKNAKHWERDLDLQYVV QGGPAKDLSLRLRWATHRGTGGYSAVDNDIDEYRVIVDYPIDVF
BLASTP |
DIAMOND BLASTP (DIAMOND is faster than BLASTP)
Search for conserved domains in this protein at NCBI CDD site
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