Pseudomonas stutzeri A1501, PST_1624

Gene Ontology

Ontology	Accession	Term	GO Evidence	Evidence Ontology (ECO) Code	Reference	Comments
Molecular Function	GO:0003700	DNA-binding transcription factor activity	ISM Inferred from Sequence Model Term mapped from: InterPro:PF00126	ECO:0000259 match to InterPro signature evidence used in automatic assertion
Biological Process	GO:0006355	regulation of transcription, DNA-templated	ISM Inferred from Sequence Model Term mapped from: InterPro:PF00126	ECO:0000259 match to InterPro signature evidence used in automatic assertion

Functional Classifications Manually Assigned by PseudoCAP

Functional Predictions from Interpro

Analysis	Accession	Description	Interpro Accession	Interpro Description	Amino Acid Start	Amino Acid Stop	E-value
CDD	cd08461	PBP2_DntR_like_3	-	-	101	298	3.75373E-101
Pfam	PF03466	LysR substrate binding domain	IPR005119	LysR, substrate-binding	101	297	1.3E-30
Gene3D	G3DSA:3.40.190.10	-	-	-	93	295	1.5E-63
PRINTS	PR00039	LysR bacterial regulatory protein HTH signature	IPR000847	Transcription regulator HTH, LysR	26	37	5.5E-5
Pfam	PF00126	Bacterial regulatory helix-turn-helix protein, lysR family	IPR000847	Transcription regulator HTH, LysR	11	70	7.6E-14
PRINTS	PR00039	LysR bacterial regulatory protein HTH signature	IPR000847	Transcription regulator HTH, LysR	37	47	5.5E-5
SUPERFAMILY	SSF53850	Periplasmic binding protein-like II	-	-	93	296	2.17E-41
Gene3D	G3DSA:1.10.10.10	-	IPR036388	Winged helix-like DNA-binding domain superfamily	2	90	2.6E-21
PRINTS	PR00039	LysR bacterial regulatory protein HTH signature	IPR000847	Transcription regulator HTH, LysR	47	58	5.5E-5
PANTHER	PTHR30118	HTH-TYPE TRANSCRIPTIONAL REGULATOR LEUO-RELATED	-	-	3	298	1.3E-91
Gene3D	G3DSA:3.40.190.10	-	-	-	174	270	1.5E-63
SUPERFAMILY	SSF46785	Winged helix DNA-binding domain	IPR036390	Winged helix DNA-binding domain superfamily	6	88	1.78E-18

Search for additional functional domains at the NCBI CDD database website. Go to this protein's amino acid sequence and follow the link.