Pseudomonas aeruginosa AZPAE14352, NQ48_RS28435

Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown

Sequence Data

Strain Pseudomonas aeruginosa strain AZPAE14352 AZPAE14352_contig_40, whole genome shotgun sequence. [Details]
DNA Sequence Upstream of Gene
CTATGCACCAATCGCTATCTGGCCGAGCGCCTGGGTGCCGGCACCGCGCTGGGCTTCGAACGGCCCGGGCCGGTCGCCGCCGCACGCCTGCGCAACGCGC CCAGCGCGCAGAGCCAGCCGCGCCTGGACGGCCAGTCGCGCTGGAGACTGGTCTCGCAGCTGACCCTCAACCACCTCTCGCTGGTGGAAGGCCCGCGCGC CCTCGAAGCCCTGCGGGAAATCCTCGCCCTGCACAACCTGCGCGACGATGCCAGCGCCCGCCGGCAGATAGAAGGGCTGAGGCAACTCGACTGCCAGCGG GTGGTGGCGCACGTCGGCGAGGATGCCTGGCGCGGCTGGCGCAATGGCCTGGAAATCCGCCTGCGACTCGATCCGCAACACTTCGTCGGCGCCAGCGGCG TGCTGTTCTCCGCCGTGCTGGCGCAGTTCTTCTCGCTGTATGCCACCGCCAACCGCTTCGTGCGCACGGTCCTGGTGGAAGCCGACAAGGAGGTGAAGAC
DNA Sequence for Gene
>NQ48_RS28435
ATGGCAACCCCAGGCCGGCTCGCCGCTCTCCCTCTGAGTCAGCGGCTGCGCCGCACGCCGCAGCGCTTCGAACTGTTGCAGGCGCTGCTGCTGCTCGAAC GCGAGCGTCCCCAGGCGTTGCCGCTGGGCACCGGCAACGCGCCGCGGGCGGAGGCCCTGCGCCTGCGCGGGCCGCTGTTGCCGCTGTTCGCCTCGAGCGA GGTGGAAAGCCTGCTCGACGACCCGCAGCAACCGGTGCTGTCCACCCTGGTGTTCGGCCTCGGCGGCCCCGACGGCCCGTTGCCCTATGCCTACCAGGAA TGGCTGCAACAACGCGCCCGGCAGAAGGACCATGCCCCCGCCGAGTTCCTCGACCTGTTCCAGCACCGCCTGCTCAGCCTGCTCTACCGGGTGCTGCGCA AGCATCGCGTGGCGCTCGGTTTCGCGGTGCCGGCGGCGACCCCGGTGCAGGCGCAGCTACGTGCCCTCAGCGGCCTGTTGCCAAAAGCCCTGCATGAACG CCTGGCGCTGCCGGACAGCGCGGTGCTGGCACGCACCGCGCTGTTCGCCGGCGGGCGTCGCTCCCTGGCCGGCTTCGCCGGCCTGGTGCGCCAGCACTTC GGCGTGGAGGCACGGCTGGACGCCTACCAGGGCGCCTGGAAGGAAATCCCCACGGCCAGCCGCAGCCGGCTGCAACGCGGCGGGCGCAACCTGCGCCTGG GTCGCGATGCCATAGCCGGCACGCGCACCTGGGACGAACACGCCGGCATCGCCCTCAGCCTCGGTCCGCTGGATGCCCGCGAGGCCGCCCGCTTCTTCCC CGACGGCGACGCCCATGGCCAGTTGGCCAGCCTCGCCGCGCTGTACTTCGGCCCCGACCTGGATTGTCGCCTGAGCCTGCTGGTGAGCGGCGGCGCGCCG CTGCGCCTGGAGCGCGGTACACCGCCCAGGCTGAGCTGGAACACCGGCCTGCGGCGCATCGAAGACGGCCAGCGGCAGCGCATCGATCTCGACCTGCGGC AGCCGGAGGTAGCTTGA
BLASTN Search  |  DIAMOND BLASTX Search (DIAMOND is faster than BLASTX)
DNA Sequence Downstream of Gene
AATGGAACTCGCCGCCCTGATCGGCCGCCTCAACCCGGATTGTCGCCGCGCCCTGGAGCGCGCCGCGCAACGCTGCCTGCAACGCACCCATCATTACGTA GAGATCGAGCACCTGCTGCTGGAGCTGCTGGACATCGACGGCGGCGACTTCGCCTGCCTGCTGCCGTGCTTCGGCCTGGAGCGCGACGCCCTGGTCGCCG AGATCAACCTGTCGCTGGAGCTGTTCAAGGCCGGCAATACCCGCACTCCGGCGCTGTCCGCGCACACCATCGGCCTGCTCGAAGACGCCGTGGTGCACGC CAGTGTGCTCGGCCAGGCGCAGATCCGTTCCGGCCTGCTGCTGCTCGCCTTGCTCGACCGCGAGGAGCGCCGCGCCCTGTTGCTGAACAGCGCGTCGTCG CTGCTGCGGATTCCCCACGAGGCCTTGCAGGCCAACCTGCTGGAGTGGATCCAGGCCTCCCGCGAACAGCCGCCCGCGCCGAACCGTCCGGCGGCAGGCG
Amino Acid Sequence
>type VI secretion protein
MATPGRLAALPLSQRLRRTPQRFELLQALLLLERERPQALPLGTGNAPRAEALRLRGPLLPLFASSEVESLLDDPQQPVLSTLVFGLGGPDGPLPYAYQE WLQQRARQKDHAPAEFLDLFQHRLLSLLYRVLRKHRVALGFAVPAATPVQAQLRALSGLLPKALHERLALPDSAVLARTALFAGGRRSLAGFAGLVRQHF GVEARLDAYQGAWKEIPTASRSRLQRGGRNLRLGRDAIAGTRTWDEHAGIALSLGPLDAREAARFFPDGDAHGQLASLAALYFGPDLDCRLSLLVSGGAP LRLERGTPPRLSWNTGLRRIEDGQRQRIDLDLRQPEVA
BLASTP | DIAMOND BLASTP (DIAMOND is faster than BLASTP)
Search for conserved domains in this protein at NCBI CDD site