Pseudomonas aeruginosa AZPAE14352, NQ48_RS02470
Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
Sequence Data
| Strain | Pseudomonas aeruginosa strain AZPAE14352 AZPAE14352_contig_2, whole genome shotgun sequence. [Details] | |
| DNA Sequence Upstream of Gene |
TCTAGCGCTGCGTCCTGCCCATGCTCCAGCCGCCAGACCGAACGGCGGGCGATAGTCGGACAGGCCCTTTGATCATGACCGCCACGGTCGCGATACGGAA TCGCGCTCAGCCGCTACTTCCGCCCCACTGTTTCCGCCGCTTCCGCTGCCGAGCCCATTATCACCGGAGTTTTTTCCTACAGCAGTCCTCCCAGTCCCCT ACGAAAACCAAGAAGTTCTACCGGCCAACGCCAGAAAACTACGATTGTCGCCGTTTCAGCCTCGCCCCAGGCTATCGCCCACTCGATTCTCCGCCTTGAA ACCGATCGTTCTGCACATGCCTGCGGATATCGGCTTCTTTTCCCTGCAAGAACCGCGCTCCGGGCCGATTGACCATGCATCCAGCTTTTCCGCGTAACCA GGCTAGCCTTTCTTTCCCACCTCCCTCTCCAAAACCTTCCGGCAGTTCCACTTCGATCGTTCCATCCCTCAGGGCCGGACCGCTGCTCCGTACGGGCCTC
|
|
| DNA Sequence for Gene |
>NQ48_RS02470
ATGGGAATGGCCATGTTGTCGTCCTGCCTTGCCAATGCCGCCCCGGATGCGGGGCAGGCGCTGCGTGACGTGGAAAGCCGACGCCTGAACCTGCCCGCGC CGGTGGAACTGGACGCCGAGCGCCCCAGCCCCGAGGACGGCGTATCACGGGCTGCCGAAGAGGGCGGCCCGACGGTGCTGGTCAAGCGCTTCCAACTCAG CGGCAACAGGCAGTTCGACGATCGACGCCTGCTGGCGCTCCTGCACGACCTGCCGGGCCAGGAACTCAATCTGAGCCAATTGCACGCCGTCGCCGCCCGC ATCGGCGATTTCTATCAGGAAAAGGGATATGTGCTGGCGCGCGCCTTCCTCCCGGCACAGGAAATCCAGGATGGAACGGTACGCATCGAAGTGCTCGAGG GACGCTACGGCAGGATCGAACTGCACAACACGTCCCGAACGCTGGACCGCGTTCTACTCCGCCCCTTGAGCGCACTCGAACGAGATACCGCGGTCCAGGG CTCGGAGCTGGAGCGTGCGCTTCTGCTCCTGAGCGACATTCCCGGCCTCCAGGCCAAAGGCACCCTGCTGCCGGGCCAGGCGCAGGGAACCACGGACTTG CGCGTCGAGGCCCGCCCCGGCCCGCTGGTCGGCGGCAGGCTGGAGGCAGACAACTATGGCGGCCGCTACATGGGGGAATATCGCCTGGGAACCACCCTCG ACTTCAACAGCCCGCTGCGACTGGGCGACCAGGCGAGACTGAGCCTGCTGGGCAGCGACCGGCACCAACGCTACTACCGTGCAGCCTATCAACTGCCCCT TGGTTCCCGAGGCACGCGCATCGGACTGGCCCACGCCAAGACGACCTATCGACTGGTACGCGATTTCTCGCGCCTGGACGCCCATGGCCGGGCCATTACC GACAGTCTGTTCGTCAGCCAGCCCCTGCTGCGTAGCCGCAGCTTAAGCCTGTCCACCCAGTTGCAATATGAAAACAAGCGACTTCGCGATGACCAGGAGC GTACCGGGAGGCATAGCCGCAAGGAGATCCGCCTGTGGACCGCCAGCATCAGCGGAAACGCCCAGGACCGCTTGTTCGGCGGTGGACAGAGCGGCTTCTC GCTGGCCTATGCCCACGGCCAGCTCGCCATCGACTCCGGCGAAGAGCGGCTGCTGGACCGCTACACCATCGGTACCGCCGGCAGCTTCGACAAGATCATG CTCAACGCCGTACGCCTGCAGCACCTGGGCGACCGCCTGCAGTTGTTCGCCCAACTCAACGCCCAGTGGAGCGGCGGCAACCTCGACAGCGCGGAACAGT TCGACATGGGCGGCCCCTACGGCGTTCGGGCGTTCCCCCTGGGCAGCTACAAGGGCTACGGCGACGAAGGCTGGCAAGCCAGTGCGGAGCTGCGCTACAG CCTGGCTCCGGGCTGGCAGCTGAGTTCGTTCGTCGACCAGGGCGCGGTGGAATTCCTCAAGCACCCCAACACCACGGAAGGCAATCGCAACCGCATGGCC GCCGTCGGCAGCGGCGCAACCTGGTACGGAACGGATCACCAGGTCAGCCTGACCGCCGCCTGGCCCCTGAGCCAGGAAAACAACATCGAGCCCGAGCGCA CTCCCCGGCTGTGGTTGCAAGCGACCCGCTACTTCTGA
BLASTN Search
|
DIAMOND BLASTX Search (DIAMOND is faster than BLASTX)
|
|
| DNA Sequence Downstream of Gene |
GCAAGCTCCCGCCCGCCATGCCGGCGGGCCCCACTGAAAGGAAAAGCCATGAACAAGAGCTATACGCTGGTCTGGAACCAGGCCACAGGCTGTTGGAACG TCGCAAGCGAAGGTACCCGTCGGCGCAGCAAGAGCGGACGCGGCAAGGCGCTCGTAGTCGCCGGAGCGTCACTGCTCGGCCTGTTCTGCCAGGCCCCCGC CTTCGCCCTGCCCAGCGGCGCCACGGTCGTTTCAGGCGATGCCGGATTCCAGACATCCACCGATGGCCGGCATATGGTCATCGACCAGCAGAGCCACAAG CTGATCACCAATTGGAACGAGTTCAGCGTCCGCGCCGATGAGCGGGTCAGCTTCCACCAGCCGGGCCAGGACGCCGTCGCCCTGAACCGGGTGATCGGCC GCAACGGCAGCGATATCCAGGGGCGGATAGATGCCAACGGCAAGGTCTTCCTGGTCAATCCCAACGGCGTGGTCTTCGGCAAGTCCGCCCAGGTCAATGT
|
|
| Amino Acid Sequence |
>membrane protein
MGMAMLSSCLANAAPDAGQALRDVESRRLNLPAPVELDAERPSPEDGVSRAAEEGGPTVLVKRFQLSGNRQFDDRRLLALLHDLPGQELNLSQLHAVAAR IGDFYQEKGYVLARAFLPAQEIQDGTVRIEVLEGRYGRIELHNTSRTLDRVLLRPLSALERDTAVQGSELERALLLLSDIPGLQAKGTLLPGQAQGTTDL RVEARPGPLVGGRLEADNYGGRYMGEYRLGTTLDFNSPLRLGDQARLSLLGSDRHQRYYRAAYQLPLGSRGTRIGLAHAKTTYRLVRDFSRLDAHGRAIT DSLFVSQPLLRSRSLSLSTQLQYENKRLRDDQERTGRHSRKEIRLWTASISGNAQDRLFGGGQSGFSLAYAHGQLAIDSGEERLLDRYTIGTAGSFDKIM LNAVRLQHLGDRLQLFAQLNAQWSGGNLDSAEQFDMGGPYGVRAFPLGSYKGYGDEGWQASAELRYSLAPGWQLSSFVDQGAVEFLKHPNTTEGNRNRMA AVGSGATWYGTDHQVSLTAAWPLSQENNIEPERTPRLWLQATRYF
BLASTP |
DIAMOND BLASTP (DIAMOND is faster than BLASTP)
Search for conserved domains in this protein at NCBI CDD site
|