Pseudomonas stutzeri A1501, PST_0078 (dctP)

Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
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Gene Ontology

Ontology Accession Term GO Evidence Evidence Ontology (ECO) Code Reference Comments
Biological Process GO:0055085 transmembrane transport
ISM
Inferred from Sequence Model
Term mapped from: InterPro:PTHR33376
 ECO:0000259
match to InterPro signature evidence used in automatic assertion
Cellular Component GO:0030288 outer membrane-bounded periplasmic space
ISM
Inferred from Sequence Model
Term mapped from: InterPro:TIGR00787
 ECO:0000259
match to InterPro signature evidence used in automatic assertion

Functional Classifications Manually Assigned by PseudoCAP

Pathways

Database Xref Pathway Version Evidence PMID
KEGG psa02020 Two-component system 81.0+/01-23, Jan 17 ECO:0000249
sequence similarity evidence used in automatic assertion

Functional Predictions from Interpro

Analysis Accession Description Interpro Accession Interpro Description Amino Acid Start Amino Acid Stop E-value
NCBIfam NF037995 NCBIFAM: TRAP transporter substrate-binding protein DctP - - 55 326 2.1E-56
CDD cd13674 PBP2_TRAP_SBP_like_1 - - 53 350 0.0
PANTHER PTHR33376 - IPR018389 TRAP transporter solute receptor DctP 26 353 0.0
NCBIfam TIGR00787 JCVI: DctP family TRAP transporter solute-binding subunit IPR004682 TRAP transporter solute receptor, DctP family 56 301 1.3E-82
FunFam G3DSA:3.40.190.170:FF:000001 TRAP dicarboxylate transporter, DctP subunit - - 51 353 3.4E-129
PIRSF PIRSF006470 DctB IPR004682 TRAP transporter solute receptor, DctP family 23 355 0.0
Pfam PF03480 Bacterial extracellular solute-binding protein, family 7 IPR018389 TRAP transporter solute receptor DctP 56 338 2.2E-112
Coils Coil Coil - - 285 305 -
Gene3D G3DSA:3.40.190.170 - IPR038404 TRAP transporter solute receptor DctP superfamily 50 356 2.2E-100

Search for additional functional domains at the NCBI CDD database website. Go to this protein's amino acid sequence and follow the link.