Pseudomonas aeruginosa AZPAE14359, NQ50_RS26260 (ligD)
Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
Sequence Data
| Strain | Pseudomonas aeruginosa strain AZPAE14359 AZPAE14359_contig_27, whole genome shotgun sequence. [Details] | |
| DNA Sequence Upstream of Gene |
CCTAATCGCCGTGGTCACGCTGCTCCGGCGCAAGCGGGGCGGACGGCGCGAACCTTGCAGCGAAGCCTTCCTGACAATCCGACAGGGAGAACCATGGTGA ACGGAGAAAACAAGATCGTCCTGGTCCTCGAAGAACACGCCGACCAGCTCTGGCGGATCGAGGAATTCCTCCTCGATCGAGGCTACGCGGTGCTCAGCGC GGCGAGTCGCGACGAAGCCCTCGACCACCTGGCCTCGGACGCGGTGATCGACCTGTTCCTGCTCAGCGAGCAGCTCGAAGGTCCTCTGAGCGGCAGCATG CTCATCGAAACCAGCCTGCCGGTGCGCCCGCGGATGCGGGTGATCCTGCTCAGCGACAGCGCTCGCGTCGGCATCGACCCGGCGGCACCCTATCCGGTGC TGCTCAAACCGGTGACCCTGGAGGAACTGGGGAAAGCCATCGACCTGGTCCTGCACAGCGCGCCGGTCTGCCCCGGCGTCTGACCACCGAGGAGCCCGCC
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| DNA Sequence for Gene |
>NQ50_RS26260
|ligD
ATGCCCAGCAGCAAGCCGCTCGCCGAGTACGCCCGCAAGCGCGATTTCCGCCAGACCCCGGAGCCCAGCGGCCGCAAGCCTCGCAAGGACAGCACCGGGC TGCTCCGCTATTGCGTCCAGAAGCACGACGCCAGCCGCCTGCACTACGACTTCCGCCTGGAGCTGGATGGCACCCTGAAGAGCTGGGCGGTGCCCAAGGG GCCGTGCCTCGACCCGGCGGTGAAGCGGCTCGCGGTGCAGGTTGAGGACCATCCGCTGGACTATGCCGATTTCGAAGGCAGCATCCCCCAGGGGCACTAC GGCGCCGGCGATGTCATCGTCTGGGACCGAGGCGCCTGGACGCCTCTGGACGATCCGCGCGAGGGCCTGGAAAAGGGCCATCTCAGCTTCGCTCTGGATG GCGAGAAACTCTCCGGGCGTTGGCACCTGATCCGCACCAACCTGCGCGGCAAGCAGCCCCAGTGGTTCCTGGTCAAGGCCAAGGACGGCGAGGCGCGCAG CCTGGATCGCTTCGACGTGCTGAAGGAGCGTCCCGACAGCGTGCTCAGCGAGCGTACGCTGCTGCCCCGCCATGGCGAAGCCGCCACGCCCGCGGCCAGG CCGGCGCGACGCGGCAAGAGCGGGGGGGAGACGCCGATGCCCGAATGGATCGCCCCCGAGCTGGCCAGCCTGGTCGAGCAGCCTCCGCGAGGGGAGTGGG CCTACGAACTCAAGCTGGACGGCTATCGGCTGATGAGCCGCATCGAAGACGGCCGCGTGCGCCTGCTGACCCGCAACGGCCATGACTGGACCGAACGCCT GCCGCACCTGGAGAAGGCCTTGGCCGGGCTCGGTCTGCAGCGCAGTTGGCTGGACGGCGAACTGGTGGTCCTCGACGAGGAGGGTCGACCGGACTTCCAG GCCTTGCAGAACGCCTTCGAGGAAGGTCGCGGCGAGAACATCCTGTACGTCCTCTTCGATCTGCCGTACCACGAAGGCGAGGATCTGCGCGATGTCGCCC TGGAGGAGCGCCGCGCGCGCCTGGAGGCGCTGCTGGAAGGGCGCGACGAAGACCCGCTGCGGTTCTCCGCGACGCTCGCGGAAGACCCCCGCGACCTGCT GGCCAGCGCCTGCAAGCTCGGTCTCGAAGGCGTGATCGGCAAGCGTCTGGGCAGCGCCTACCGTTCGCGCCGCAGCAACGACTGGATCAAGCTGAAGTGC CAGTTGCGCCAGGAGTTCGTGATCGTCGGCTATACCGAGCCGAAGGGCTCTCGCCGGCATATCGGCGCCTTGCTGCTCGGCCTCTACAGCCCTGACGAGG AGCGCCGGCTGCGCTATGCCGGCAAGGTCGGCAGCGGCTTCACCGCGGCCAGCCTGAAGAAGGTCCGTGAGCGCCTGGAACCCCTCGCGGTCCGCTCCAG CCCATTGGCGAAGGTGCCGCCGGCGCGCGAGACCGGGTCGGTGCAGTGGGTGCGCCCGCAACAGCTGTGCGAGGTTTCCTATGCGCAGATGACCCGTGGC GGGATCATCCGCCAGGCAGTGTTCCACGGCTTGCGCGAAGACAAGCCGGCGCGCGAGGTGACCGGCGAGCGTCCCGCCGGCCCGCCGTCGCTGCGCGGCG CGCGCAAGGCCGGCGCCGGTGCGTCGCGGGCGGCCACCGCCGGCGTGCGCATCAGCCATCCGCAGCGGCTGATCGACCCGTCGATCCAGGCCAGCAAGCT GGAACTCGCCGAGTTCCATGCGCGCTACGCCGACCTGCTCCTGCGCGACCTGCGCGAGCGCCCGGTGTCGCTGGTGCGCGGCCCCGACGGAATCGGCGGC GAACTGTTCTTCCAGAAGCACGCGGCGCGCCTGAAGATCCCCGGCATCGTCCAGCTCGACCCGGCGCTCGATCCCGGTCATCCGCCGCTGTTGCAGATCC GCAGCGCCGAGGCGCTGGTCGGCGCGGTGCAGATGGGCAGCATCGAATTCCATACCTGGAACGCCAGCCTGGCCAACCTGGAGCGGCCCGACCGTTTCGT CCTCGACCTCGACCCGGACCCGGCGCTGCCGTGGAAGCGCATGCTCGAAGCGACCCAGCTGAGCCTGACGTTGCTCGACGAGCTGGGCCTGCGCGCCTTC CTCAAGACCAGCGGCGGCAAGGGCATGCACCTGCTGGTGCCGCTGGAGCGCCGGCATGGCTGGGACGAGGTCAAGGATTTCGCCCAGGCCATCTCCCAGC ACTTGGCGCGCCTGATGCCGGAGCGTTTCTCGGCGGTTTCCGGGCCGCGCAACCGGGTCGGCAAGATCTTCGTCGACTACCTGCGCAACAGCCGCGGCGC CAGCACCGTGGCCGCCTACTCGGTGCGTGCCCGCGAAGGGTTGCCGGTGTCGGTACCGGTGTTCCGCGAGGAACTCGACTCGCTGCAGGGCGCCAACCAA TGGAACCTGCGCAGTCTGCCGCAGCGCCTCGACGAACTCGCCGGCGACGATCCCTGGGCCGACTACGCCGGCACCCGCCAGCGCATCAGCGCGGCCATGC GGCGCCAGCTCGGGCGCGGCTGA
BLASTN Search
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DIAMOND BLASTX Search (DIAMOND is faster than BLASTX)
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| DNA Sequence Downstream of Gene |
CCGTCCGCGAAAAAGGCGGAACTCCCCCGGCGCACAGGGCCTCCACCATGCAACGAGATGCCGAGGAGGCCCCCGATGGATACCGCCTACCTGATCCTCG CGCTGCTGGTCCTGTTGCTCCTGGTGGATGCCTGGGCCATCAACAGCGTGCTCCGCAGCGACAGCTCCGCCAGTCGCAAGCTCGGCTGGTCGCTGCTGAT CCTGCTCCTGCCCGTGCTCGGCCTGGTCCTCTGGGGCTGGACCGGCCCCCGTGGCTTGCGCCCGGTGACCTCACCGGAACACAGCAAGTGAACCCCACTG GAGACTGCCCATGAACAGCGAAACCTGTGCCTGTCCCAAATGCACCTGCCAGCCCGGCGCCGATGCCGTCGAACGCGACGGCCAGCACTATTGCTGCGCG GCCTGCGCCAGCGGCCACCCCCAGGGCGAGCCGTGTGGCGACGCCGATTGCCCCTGTGGCGGCACCACCCGGCCCCAGGTGGCGGAGGATCGCCAGCTGG
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| Amino Acid Sequence |
>DNA ligase D
MPSSKPLAEYARKRDFRQTPEPSGRKPRKDSTGLLRYCVQKHDASRLHYDFRLELDGTLKSWAVPKGPCLDPAVKRLAVQVEDHPLDYADFEGSIPQGHY GAGDVIVWDRGAWTPLDDPREGLEKGHLSFALDGEKLSGRWHLIRTNLRGKQPQWFLVKAKDGEARSLDRFDVLKERPDSVLSERTLLPRHGEAATPAAR PARRGKSGGETPMPEWIAPELASLVEQPPRGEWAYELKLDGYRLMSRIEDGRVRLLTRNGHDWTERLPHLEKALAGLGLQRSWLDGELVVLDEEGRPDFQ ALQNAFEEGRGENILYVLFDLPYHEGEDLRDVALEERRARLEALLEGRDEDPLRFSATLAEDPRDLLASACKLGLEGVIGKRLGSAYRSRRSNDWIKLKC QLRQEFVIVGYTEPKGSRRHIGALLLGLYSPDEERRLRYAGKVGSGFTAASLKKVRERLEPLAVRSSPLAKVPPARETGSVQWVRPQQLCEVSYAQMTRG GIIRQAVFHGLREDKPAREVTGERPAGPPSLRGARKAGAGASRAATAGVRISHPQRLIDPSIQASKLELAEFHARYADLLLRDLRERPVSLVRGPDGIGG ELFFQKHAARLKIPGIVQLDPALDPGHPPLLQIRSAEALVGAVQMGSIEFHTWNASLANLERPDRFVLDLDPDPALPWKRMLEATQLSLTLLDELGLRAF LKTSGGKGMHLLVPLERRHGWDEVKDFAQAISQHLARLMPERFSAVSGPRNRVGKIFVDYLRNSRGASTVAAYSVRAREGLPVSVPVFREELDSLQGANQ WNLRSLPQRLDELAGDDPWADYAGTRQRISAAMRRQLGRG
BLASTP |
DIAMOND BLASTP (DIAMOND is faster than BLASTP)
Search for conserved domains in this protein at NCBI CDD site
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