Pseudomonas aeruginosa AZPAE14373, NQ52_RS04485
Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
Sequence Data
| Strain | Pseudomonas aeruginosa strain AZPAE14373 AZPAE14373_contig_2, whole genome shotgun sequence. [Details] | |
| DNA Sequence Upstream of Gene |
CGCGGCGCAGCGACTCCAGCAGGGCCAGGCCGTCGAGGCCGGGCAGCATGATGTCCAGCAACACCAGGTCGAACGCTTCGCGCCCGGCGGCTTCCAGCCC GTGCGAGCCATCGCCGCAGACGGTCACGCGGAAGCCGCGCTGGCGGAAATGCGCGTCGAGATCCTCGCGCAGGCGCGGGTCGTCTTCGACCAGCAGCAGG CGGGGAGATGGGTTTGAGATATGAGAATGATTCACGTTCGTGAATATCTCATTTTTGCCGGGGATCGGGCAATGGGCCAATGCGACGCATCGCGCACGGA GCGGAAATACTTTTCGACAAAGCCGTCGTTGCTTCGGTTTTTTTTCTGGCTTAGGGTCGGCGGGTCCGCAGGAGGCGGGCAGGGGTGTCGTGGCTATTGG CTAGCCTTTCGCGACGGCACGGGGTTGTACGATCATCTTGCGCGCCGCTGGCGCGTTGTTCGGGCCGCCCGCCGCAGGTGACTATCAAGGAAGATTGCCC
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| DNA Sequence for Gene |
>NQ52_RS04485
ATGCTGTTCTCCCAACATACCCGTCTGGTGCACGTGGACTCCCCGCTGGGCCCCGAGGTCCTGCAACTGCAACGGCTGGAAGGCCGCGAGGAGCTGGGCC GGCTGTTCAGCCACGAACTCGAACTGGTCTCGAGCAATCCCGCCTTGCCTCTGGATGCCCTGTTGGGCAAGCCGATGAGCCTCGCGCTGGAACTCCCCGG CGGTAGCCGGCGGCACTTCCACGGCATCGTCGCGCGCTGCAGCCAGGGCGCCGGCGCCGGCCAGTTCGCCAGCTACCAGGTCACCCTGCGCCCCTGGCTG TGGCTGCTGACGCGCACTTCGGACTGCCGCATCTTCCAGAACCAGAAGGTCCCGGACATCATCAAGCAGGTGTTCCGCGACCTCGGCTTCTCCGACTTCG AGGACGCCCTGAGCCGCTCCTACCGCGAGTGGGAATACTGTGTGCAATACCGCGAGACCAGCTTCGATTTCGTCAGCCGGCTGATGGAGCAGGAAGGCAT CTACTACTGGTTCCGCCACGAAAAGAAGCGCCACATCCTGGTGCTCTCCGATGCCTACGGCGCGCACCACAGCCCGGCCGGCTACACCAGCGTGCCCTAT TACCCGCCGAGCCTCGGCCACCGCGAGCGCGACCACTTCTTCGACTGGCACATGGCGCGCGAGGTCCAGCCCGGCTCGCTGAGCCTCAACGACTACGACT TCCAGCGTCCCGGCACCCGCCTGGAAGTGCGTTCGAATGTCGGCCGCGCCCATGCCGCGGCTGACTACCCGCTATACGACTACCCTGGCGAGTATGTGCA GAGCCAGGACGGCGAACACTATGCGCGGACCCGCATCGAGGCGATCCAGACCCAGTACGAGCGAGTTCGCCTGCGGGGATGCGCCAGGGGCATCGGGGCG GGCCACCTGTTCCACCTGAGCAACTACCCGCGTCTCGACCAGAACCGCGAATACCTGGTGGTCGGCGCCGAGTACCGGGTGGTCCAGGAACTCTACGAGA CCGGCAGTGGCGGCGCCGGCTCGCAGTTCGAGAGCGAGCTGGACTGTATCGATGCCGGCCAGGCCTTCCGCCCCTTGCCGTCGACCCCCGTGCCGGTGGT GCGTGGCCCGCAGACCGCGGTGGTGGTGGGGCCCAAGGGCGAGGAGATCTGGACCGACCAGTACGGCCGGGTCAAGGTGCATTTCCACTGGGACCGCCAC GACCAGTCCAACGAGAACAGCTCCTGCTGGATGCGCGTCTCGCAGGCCTGGGCCGGGAAGAACTGGGGCTCGGTGCAGATCCCACGGATCGGCCAGGAAG TGATCGTCAGCTTCCTCGAAGGCGACCCGGATCGGCCGATCATCACCGGGCGGGTCTACAACGCCGAGCAGACGGTGCCCTACGAGCTGCCGGCGAACGC CACCCAGAGCGGCACCAAGAGCCGTTCGAGCAAGGGCGGCACGCCGGCCAACTTCAACGAGATCCGCATGGAGGACAAGAAGGGCGCCGAGCAGCTGTTC ATCCATGCCGAGAAGAACCAGGACATCGAGGTCGAGAACGACGAGACCCACTGGGTCGGCCATGACCGGACCAAGATCATCGACCACGACGAGACCGTGC ATGTGAAGCACGATCGCACCGAGACCGTGGACAACAACGAGACCATCACCGTGCATGCCAACCGCAGCAAGACGGTCGACCGCAACGAGACGGTCAGGAT CGGCATGAACAAGACGGAAACCATCCTCATGGCTTCGTTGCAGAACGTCGGCATGGGGCGCATGGAAAACGTCGGGCTCGGCTACAGCCTGAACGTCGGC ATGATGATGAACACCGTGGTCGGGCTGAACCAGAGCACCCAGGTGATGAAGAAGAAGACCTTGTCGGTGGGCGACAGCTACGAAGTGAGCGTGGGCGGCA GCGACGATGGCTCGAAGATCACCCTGGACGGTCAGAGCATCACCCTCGGCAGCCAGCGCATCGAGCTGACCGCCGACCGCGAGATCCTCTTGCGCTGCGG CCAGAGCACGATCCGCCTGACCCCGGGGGAGATCGAGATCCTCTCGCCCAATGTCGATATCAACTGTTGA
BLASTN Search
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DIAMOND BLASTX Search (DIAMOND is faster than BLASTX)
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| DNA Sequence Downstream of Gene |
GCGGCGGGCGGATGTCCTGTCGCGGCTTTTCCCAAGGAAGGATGGATAGATGAGCGGCCTACCGGTTTCCCATGTCGGCGAAAAAGTCTCGGGAGGGGTT ATCTCCACCGGCTCGCCCACCGTGCACGTCGGCAGCAGCGCGGTCGGCCTGGCCGACCGGGCGTCCGCCTGCGTGCCGCTGGTGGGCAAGCCGGTCAACC CGATGCTCGGCAGCAAGCTGTTGCCGGAAGAGGTCGATTTCGCCCTGGCGGCGCCGGACACCTTCACCTTCGCCCGTGGCTACCTGTCGAGCAACCCGCG TATCGGCCGGCTCGGCCGGGGCTGGTGGCTGCCGGGCGAGAGCATGCACCTGGAACTGAGCGAAGACGCCTGCGTGCTGGTCGACGCCCAGGGCCGCCGG ATCGGCTTTCCCGCGCTGGCTCCCGGCGCGCAGCATTATTCCGGCAGCGAGGAGCTGTGGCTGCGCCGCGGCGGTTCGAGCGGCGGCGCAGCGCAGGCCT
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| Amino Acid Sequence |
>type VI secretion protein ImpA
MLFSQHTRLVHVDSPLGPEVLQLQRLEGREELGRLFSHELELVSSNPALPLDALLGKPMSLALELPGGSRRHFHGIVARCSQGAGAGQFASYQVTLRPWL WLLTRTSDCRIFQNQKVPDIIKQVFRDLGFSDFEDALSRSYREWEYCVQYRETSFDFVSRLMEQEGIYYWFRHEKKRHILVLSDAYGAHHSPAGYTSVPY YPPSLGHRERDHFFDWHMAREVQPGSLSLNDYDFQRPGTRLEVRSNVGRAHAAADYPLYDYPGEYVQSQDGEHYARTRIEAIQTQYERVRLRGCARGIGA GHLFHLSNYPRLDQNREYLVVGAEYRVVQELYETGSGGAGSQFESELDCIDAGQAFRPLPSTPVPVVRGPQTAVVVGPKGEEIWTDQYGRVKVHFHWDRH DQSNENSSCWMRVSQAWAGKNWGSVQIPRIGQEVIVSFLEGDPDRPIITGRVYNAEQTVPYELPANATQSGTKSRSSKGGTPANFNEIRMEDKKGAEQLF IHAEKNQDIEVENDETHWVGHDRTKIIDHDETVHVKHDRTETVDNNETITVHANRSKTVDRNETVRIGMNKTETILMASLQNVGMGRMENVGLGYSLNVG MMMNTVVGLNQSTQVMKKKTLSVGDSYEVSVGGSDDGSKITLDGQSITLGSQRIELTADREILLRCGQSTIRLTPGEIEILSPNVDINC
BLASTP |
DIAMOND BLASTP (DIAMOND is faster than BLASTP)
Search for conserved domains in this protein at NCBI CDD site
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