Pseudomonas aeruginosa AZPAE14373, NQ52_RS18775

Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown

Sequence Data

Strain Pseudomonas aeruginosa strain AZPAE14373 AZPAE14373_contig_11, whole genome shotgun sequence. [Details]
DNA Sequence Upstream of Gene
CCGCGACCTCGATGCGGTGGAAGGGCTGCGCCGGCACTTCGTCGCGAGTGGCGTGGAAGTCGCCACCCAGGCCGAGGCCATCGCCCAGGTGCGCAGCCTC AGTCGCAACCTCGGCCTGGTGTTCTGGATCGTCGCCGCGCTGGCCATCGGCGGTGCCTTCGCCGCCATCGCCGCCAGCAGCCTGGCCGCCGTCGAACGCA AGCGCCGCGCCCTGGCGGTGCTGCGTCTGCTGGGCTTCCCGACCGCCGCGCTGGTCGGCTTCGTCATGCTCCTGGCGCTGTTCAGCGCCGTCTTCGGCCT GTTCCTCGCCGGGCTGCTGTACGCCGCCACGGCCGGCGCGCTGAACCACCTGTTCGACAACCAGAGCGGCGAGTTCGTCTGCCGCCTGCTGCCCAGCCAC TACCTGACGGCGCTGCTCGCCACGCTGCTGTGCAGCGTCCTGGCCGCCGCCAGCGGCGGCTGGCGCGCGGCGCGGATCGAAGCCGCAGAGGGATTACGCG
DNA Sequence for Gene
>NQ52_RS18775
ATGTTTGAGAAAGCCATTCTTCCGCTCGCCCTCGGCGCCTGCCTGGCGCTTGCCGCGCCGGCTTGGGCCGAAGGCGACTCGCCGGACAATCCCAAGCCGC TGGCCGACGACGTCGCCCTGCCGCTGCCGTGCGGCGGCGAGATGGTCTTCCGGCATGTCTACGTACTCGCCGAAGGCGCCCTCGACGATCGCGAGGTCAA CCTCGGCTACGCCTTCAACGAAGGCGAGGCGGGCTACCAGCAGTCGTTCATCTCCGGCTACCGGCGCGACTACGTGAACGGCCAGTTCAGCCTCGCCGAC CTGGCACCGGCCTGGCAGCAGAAACTCTCCGCCAGCCTGCCGAAGCCCGCCGCCGGCACCCCGCTGAAGCCGATGCTGTACTTCATCGGCAAGTACGAGG TGACCGCCCGCCAGTACGCCGCGGTGATGAGCCAGGCGGCCGCGCTCTCCGGCCAGGGCGAAGCGCCGGCCTGCGACGTGCCGGGCGGGATGGCCGCGCG GCTGCCCAAGGTCGACCTCTCGCGCTTCGACGCCGAACGCTTCGGCGCGGTGTACAGCGCCTGGCTGCTGAAGAACCACCCGGATCTGCTGCCGGTCAGC GGCCGCGGCAAGAATCCCGAGGACGGCGGCACCGGCTTCGTCCGCCTGCCCACCGAGGTCGAGTGGGAGTTCGCCGCGCGCGGCGGCCAGGCGGTCAGCC GCCAGGAGCTGGAAGGCCGGCTGTTCCCGCGCAAGGTCGAGGGCAGCGACCAGGAAGGCCCGCTGGGCGACTGGGCGGTGTACAACCAGGTCGCCGGCGG CACCGGCCAGGCCGCGCGACTGTTGCCGGTGGGGATGAAGCGGCCGAACCCGCTGGGCCTGTTCGACGTGATCGGCAATGCCGCGGAGATGGTCCAGGAG TCCTTCCAGCTGGTCCACGCCGGACGCCGGCAGGGCACATATGGCGGTTTCGTGGTGAAGGGCGGGAACTATCTCGAAGGCGAGATGACTCTATTCACCG GGATGCGCCGCGAATACCCGCTGTTCGCCGCCGACGGCAGCGAACAGCGCAACGAGACCACCGGTTTCCGCGTCGCCATCGGCGCGCTGTCCGCGCCGCG CTCGCGCTATCCCGAGCTGTTCGCCCAATGGCAGAAGGAAGGCCGACTAGCGGCATTGACCGATGCCATCGATGACGCTCAAGATCCCACCAAGCAATTG GACGGAATCATTGCCGCCACCCGCGACCCGCAGATGCAGGCGCAGTTGGCCCAGATAAACGAGGAACTCAAGCGTAACGTTTCGTTGATCGCCCGGCAGC GCGAAGAGGCCGCCGGAAACCTGATACAGTCGGCGGCACTGGTCGCCGAGACGATCAACAACTACAACATACGCCTGACCAACCTCAAGAAGGACAGGGA GAAAGCCGTGGCAGCCAGGGATCAGGCGACCGCCCAGCTCTATGCCGGCGCCATCGCCAACGGGCGCAGCGCCCTCGATGGCGCATTGGCCATCTACATC GACAACCTCGCCACCGGCACCCGTTACACCGACGCGGTGATCCAGGCGCAGTTCCAGCGCATCCAGGAAGAACTCAATCGCAACCCGGTTCTGGGCAAGA GCCTGGTCAAGCGCGCGACCCTGTTCGTCAAACACGTCGGAGATTATCGCCAGCAGCACCGGGCCGAGCCGGAGGCGGTATTGAAGGAATTGCTCGCGTC CAGCGGGCGTTGA
BLASTN Search  |  DIAMOND BLASTX Search (DIAMOND is faster than BLASTX)
DNA Sequence Downstream of Gene
AGGAGTTCCGTCCGGCACCTCTCGGCAGCCGGGCGGTTCATCAAACCAGGAGTGAGATGCAATGAGCCAACCCAGCGAAAACCGTTTGATCACCTCGGCG CGCTACGCGCTCTGCCTGTTGACCGCCAGCGGCGTGCTGCTCAGCGGCTGCGCCAGCAGCGGCGTCGGCTCGGTCGCCCAGACCACCCGCGCGGAATACT ACCCGTCCTGCTACGAGCCGGTGTCGCACCTGCGCAGCACCGATAACGCGGTGCGCAACTCGGCCATCACTGGCGCCATCACCGGCGGCCTGCTGGGCGG CCTGGCCGGCGGCCTGGCCAGCGACGAGAACCGCGGCCGCAATGCCGCCCTCGCTGCCGCAGGCGGCGCCCTGGCCGGCGGCGCGGCGGGCTACTACATG GAGAAGCAGAAGCAGATCAGCGACGACCGCGCGCGCATCGGCTCCTACGCTACCGACGTCGACCGCAGCACCGTCGAGATCAACCGTAGCGTGGCCTACG
Amino Acid Sequence
>type VI secretion protein
MFEKAILPLALGACLALAAPAWAEGDSPDNPKPLADDVALPLPCGGEMVFRHVYVLAEGALDDREVNLGYAFNEGEAGYQQSFISGYRRDYVNGQFSLAD LAPAWQQKLSASLPKPAAGTPLKPMLYFIGKYEVTARQYAAVMSQAAALSGQGEAPACDVPGGMAARLPKVDLSRFDAERFGAVYSAWLLKNHPDLLPVS GRGKNPEDGGTGFVRLPTEVEWEFAARGGQAVSRQELEGRLFPRKVEGSDQEGPLGDWAVYNQVAGGTGQAARLLPVGMKRPNPLGLFDVIGNAAEMVQE SFQLVHAGRRQGTYGGFVVKGGNYLEGEMTLFTGMRREYPLFAADGSEQRNETTGFRVAIGALSAPRSRYPELFAQWQKEGRLAALTDAIDDAQDPTKQL DGIIAATRDPQMQAQLAQINEELKRNVSLIARQREEAAGNLIQSAALVAETINNYNIRLTNLKKDREKAVAARDQATAQLYAGAIANGRSALDGALAIYI DNLATGTRYTDAVIQAQFQRIQEELNRNPVLGKSLVKRATLFVKHVGDYRQQHRAEPEAVLKELLASSGR
BLASTP | DIAMOND BLASTP (DIAMOND is faster than BLASTP)
Search for conserved domains in this protein at NCBI CDD site