Strain | Pseudomonas aeruginosa strain AZPAE14395 AZPAE14395_contig_9, whole genome shotgun sequence. [Details] | |
DNA Sequence Upstream of Gene |
GTCAGCAACAGCGAATTCGTGGGTAGCCTGTACCGGGACCACCGCGGCTGGCTGCTTGCCTGGCTGAACCGCAACCTCGGCTGCCGCCAGCGCGCCGAAG ACCTCAGCCAGGACACCTTCGTTCGCCTCCTCGGCCGCCCGGAGCTGCCCGGCCTGCGCGAACCGCGCGCGTTCCTGGCGAAGGTGGCGCGCGGCCTGAT GATCGACCACTTCCGCCGCGCCGCCCTTGAGCAGGCCTATCTCGCCGAACTGGCGCTGGTTCCGGAAGCGGAGCAGCCTTCGGCCGAAGAGCAGTACCTG ATTCTCGAGGATCTCCGCGAGATTGATCGCCTGCTTGGCACGCTGTCGCTGAAGGCGCGCAGCGCGTTTCTCTATAGCCGCCTGGACGGCATGCCCCACG CGGAGATCGCCGAGCGTCTCGGAGTCTCGGTGCCGCGCGTGCGCCAATACCTGGCCCAGGGCCTGCGCCAGTGCTATATCGCCCTCTACGGAGAGCCCCG
|
|
DNA Sequence for Gene |
>NQ58_RS14430
GTGAGCGCCGACGATCGTCATTCGCCGGTACGCGCGCGGGTGCTCGACGAAGCCATCGCCTGGCAATTGCTGCTCGACTCCGGCGAAGCCCATCCCGACG ATCACCGCGCCTTCCACCGCTGGTACGCGGCGCATCCCGAACACGAACGCGCCTGGGAACAGCTCGGCGGCCTCGACCGGCACCTGGCGAGAGCCGCCAA CGGGCCGGCACGCAACGCCCTGCTGTCCGGCAACGCACGCTTCAAGCGCCGCCTGCGCCGGCTCGGCGGCAGCGCCCTGGGGCTAGTGCTGGCGCTAGGC GTCGGGCTCGGCGTGGCCAACCGCTACGTCCCGGTCCGCTACCTGCTGGCCGATGCCTACAGCGCCACCGGCGAGCAGCGCGAGCTGACCCTTCCGGATG CCACCCATGTGCGCCTGAACAGCCGCAGCGCCATCGACGTCCGCTTCGACGGCGAACGCCGCCAGGTCGTGCTACTGGCCGGCGAGATCCTGGTGGAAAC CGCCCATGGCGACCCGCGCCCCTTCGTGGTCAGCAGCGCCGATGGCGACATGCGCGCCCTCGGCACGCGCTTCCTGGTGCGCCGCGAGGAACCCGGCACG CGCCTCACCGTGTTGCAGTCGGCGGTGGCCGCGCGCGCGGAAACGCTCAGCGAAGAGCGTGTGATCAAGGAAGGCCAGCAGGTGCTGATCCTGCCGCAAG GCCTGCAGGCCAGCGAAGCGGCCCCGGCCCTGGCCGGCGCCTGGGCACAAGGCATGCTGGTGGTGGAGAACGCCCGGCTGGCCGACCTGGTGGCGGAACT GGGGCGCTATTCGCCGGCGCTGCTGCGGGTCGACCCGAGCATCGCCGACCTGCGCGTCACCGGCAGTTTCCCGCTGAAGGACACCCGCCTCGCCCTTCAG GCTTTGGAGCCGAGCCTGCCGGTGCGCAGCGTGAGACACAACGCCTGGTGGTTCGAAGTGGTGCCACGCTGA
BLASTN Search
|
DIAMOND BLASTX Search (DIAMOND is faster than BLASTX)
|
|
DNA Sequence Downstream of Gene |
ACCGAACGGGCCGGCGAAAAATTTTTCCCGCCGGCCCTATCACTTTTTCCAACTCGTCCGGCAAGGAGGCATTGAGACTCGTTTCCATCCAGGAGCCCCG CACATGCCCCGCCCGACGTTCCGTCCCGGCCTGCTCGCCCTAGCCATCGCCCTCGCCGTTCCCGCACCGTTCCTCCACGCAGCCCCGGCCGAACAGGCCA GCGTGCGCGACTACCGCATCGCCGCCGGGCCGCTGGCAGGCACCCTGAACCGCATCGCGGCCCAGGCCGGCCTGGTCCTCACCCTGGACCCGGCGCTCGC CGAAGGACGCAGCGCCCACGCCGTGCAAGGTCGCTTCGACGCGCCCGGCGCATTGCGCGAAGCGCTCAAGGGCAGCGGCCTGGAGCTGGTGGAAAATGCC GGCGGCACCTACAGCCTGCGCAAGGTGCCGGAAGACACCCTGTCGTTGCAGGCGATGACGGTCAGCGGCGCCGAGGAAGACCCACTGGGGCCGACCAGCG
|
|
Amino Acid Sequence |
>amino acid ABC transporter substrate-binding protein
MSADDRHSPVRARVLDEAIAWQLLLDSGEAHPDDHRAFHRWYAAHPEHERAWEQLGGLDRHLARAANGPARNALLSGNARFKRRLRRLGGSALGLVLALG VGLGVANRYVPVRYLLADAYSATGEQRELTLPDATHVRLNSRSAIDVRFDGERRQVVLLAGEILVETAHGDPRPFVVSSADGDMRALGTRFLVRREEPGT RLTVLQSAVAARAETLSEERVIKEGQQVLILPQGLQASEAAPALAGAWAQGMLVVENARLADLVAELGRYSPALLRVDPSIADLRVTGSFPLKDTRLALQ ALEPSLPVRSVRHNAWWFEVVPR
BLASTP |
DIAMOND BLASTP (DIAMOND is faster than BLASTP)
Search for conserved domains in this protein at NCBI CDD site
|