Strain | Pseudomonas aeruginosa strain AZPAE14395 AZPAE14395_contig_10, whole genome shotgun sequence. [Details] | |
DNA Sequence Upstream of Gene |
GCCGGCGTCGAAACGGGCCTCCTCCACCTCGCAGTGGAAACGGATCTTCTCGCGCAGACGGTACTTGTCCGCGCAATGCCGCAGGTAGTCGAGGATTTCC GCCTGCGGGGCGAACTTGCGCGACCAGTCGGCCTTCGGCTCGAAGGAAAACGAATAGAGATGCGAGGGGACGTCGCAGGCGGCGCCCGGGTAGCGGTTTT CCCGCCAGCAACCGCCGACATCGGCGGCCTTTTCCAGCACCAGATAATCGTCGATGCCTGCCTGTCGCAGGCGGATCGCCAGGCCGAGACCGGCGAAGCC GGCGCCGACCACCAGCACCCGCAAGGGGGCTTCAGGGCGGGACTCGTTGTGCATTGTTGTGCTCCCGTTTGTTGCTTGCCACGCCGTCCGGCGCGATTCC GCCCAGCGGCGGATGGCAGCATCCTAGTTCGCCGGGGCGACTGGCGTTATGGCCGGGCCGGACATAAAGTTGTGATTTTCGGTCAACCTCGGACGCCACC
|
|
DNA Sequence for Gene |
>NQ58_RS15915
ATGCCCACTCCGCCCTGGTCTCCCCGCCGCAGCGCCATCAGCGCGCACCTGCTGATCCAGTTCGGCATCGACCGCGGCCTCGGCCTGGAGCAGTGCCTGG CAGGTAGCGGCCTGGATATCCGCCTGCTCGGCGATCCCTCCGGGGAAATCGACGCGGCCCAGGAACTGAGCGTAGTGCGCAACCTGGTCCGGCACCTGGG CGACGCCTGCGCGCCGGGCCTGGCGGCAGGCCTGCGCTATCACCTCAACGCCTACGGCATCTGGGGCTTCGCCCTGCTCAGCAGCCCGACCTTCCTCAGC GCCGCGCAACTGGGCCTGCGCTACCTCGACCTGACCTTCGCCTTCCATGGCATCCGCCTGGAGGTACACGACGACGAAGCGCACCTGGTGCTCGACGACG CCGGCATTCCCGAGGACCTGCGGATTTTCCTCCTCGAACGCGACGCCGGTGGCGTGCTGCGCATCCAGCGCGACCTCACCGGGCAGCGCCTGCCGATCCT CCGCGCCGGCTTCCGCCGCCCACCGCCCGCCGATCCCGCGCCCTACGTGCGCGAGCTGGGCCTGTGCCCGGCGTTCGGCCAGGCGGACAACCGGGTGGTC TTCGAACGGCGCTTCCTCGACCTCCCGCTGCCCGGCGCCAATCCAGAGGTGGCGCGCGCCTGCGAGGAGCAGTGCCGCGCCCTGCTCGCCCGCCGCCAGG TGCGCGGCGGTCTCGCCGGACGCATCCGCGACCGCCTGCTGAGGACGCCCGGCCACTTGCCGGACATGCAGACCCTGGCCATGGAACTGCACCTCACCGT GCGTACCCTGCGTCGCCGCCTGGACGACGAGGGCAGCAGCTACCGCCTGTTGCTCGACGAGGTGCGCCAGGCCCTCGCCGAAGAGCTGCTGGCCACCGGC GCGATTCGCCTGGAGGAGATCGCCGAGCGCCTCGGCTACGGCGAGGTGTCCAACTTCATCCACGCCTTCAGGCGCTGGAAAGGCATGACGCCGCGCCAGT ATCGCCAGCGGCGACGACTCGACGCGATGTCCTGA
BLASTN Search
|
DIAMOND BLASTX Search (DIAMOND is faster than BLASTX)
|
|
DNA Sequence Downstream of Gene |
GCCGCTCCGGGCTTATTCCACGAAGGCAGGACGCCAGCGCTCGATGTTCGTTTCGCCGCCGCCTGCCAGCGGCTAGATTGGCCGTTCACGCGCGGCATCC GGCGGCGCGGCAGCGGAGGCATCTCCGCTGGCAACGGGAGAACGACACATGGGTTGCCAGCAACACGCATGGCCGGCGCACGCGCCGGAGCAGGTCGAGG CCGAGGTCAACTATATCCGCGACAACGGCCAACGGCCGGTCGCCTACACCTATCCGGCCCCCGCCGGGACGCCGCAGCGCAGCGCGCTGTTGCAGCCGAC CCGGGTGGCGATCCGCAATGCGCGTCTGCTGGCGCAACCGGCCAGCCTGGAGCGCGAGGGTTTCCAACTGGTGCGCGAGGCGAGCGCGGTGGGCGATTTC GAGGATGAAGCCCAGGTTCGTGAACGCTACTACCCGGAAAGCATCGCCCTGCTCCGCCGCCTGACCGGCGCCGCCGAGGCGGTGATCTTCGACCACACGC
|
|
Amino Acid Sequence |
>AraC family transcriptional regulator
MPTPPWSPRRSAISAHLLIQFGIDRGLGLEQCLAGSGLDIRLLGDPSGEIDAAQELSVVRNLVRHLGDACAPGLAAGLRYHLNAYGIWGFALLSSPTFLS AAQLGLRYLDLTFAFHGIRLEVHDDEAHLVLDDAGIPEDLRIFLLERDAGGVLRIQRDLTGQRLPILRAGFRRPPPADPAPYVRELGLCPAFGQADNRVV FERRFLDLPLPGANPEVARACEEQCRALLARRQVRGGLAGRIRDRLLRTPGHLPDMQTLAMELHLTVRTLRRRLDDEGSSYRLLLDEVRQALAEELLATG AIRLEEIAERLGYGEVSNFIHAFRRWKGMTPRQYRQRRRLDAMS
BLASTP |
DIAMOND BLASTP (DIAMOND is faster than BLASTP)
Search for conserved domains in this protein at NCBI CDD site
|