Pseudomonas aeruginosa AZPAE14402, NQ60_RS05405

Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown

Sequence Data

Strain Pseudomonas aeruginosa strain AZPAE14402 AZPAE14402_contig_4, whole genome shotgun sequence. [Details]
DNA Sequence Upstream of Gene
CATCAACGTCACCTTCAAGCCCGCCACTGGCGGTGCCCAGGAAGAAATCGAACTGCCGTTGAAGCTACTGGCGATCGGCGATTACACCCAGCGCACGGAT GAGCGCAAGGTGGAGGACCGCAAGCCGATCGGCATCGACAAGATGACCTTCGACGAGGTCCTGGCCAAGCAGGAGCTGGGGCTGACGCTGAGCGTACCCA ATCGTCTCCAGGAGGAGGGCGGCAGCGACGAGCTGGCGGTGGGGCTGCAGATCAACTCGATGAAGGACTTCAACCCGGCCAGCATCGTCGAGCAGGTGCC CGAGCTGAAGAAGCTGATGGAGTTGCGCGATGCGTTGGTGGCCCTCAAGGGCCCGCTGGGCAACGCCCCGGCGTTCCGCAAGGCCATCGAAAGCGTACTC GCCGACGACGAGTCCCGTAGCCGTGTGCTGGGCGAGCTGGGGCTGAGCGCCGCCCCCTCCCAGGACGCCTGAGCCACCCCCTAGCCAAGGAAGCAGATAC
DNA Sequence for Gene
>NQ60_RS05405
ATGAGCACCAGTGCCGCACAGCAAGGCCGGAACCAGAACGGCGAATACAACATTCTCGACAGCATCATCGCCGAGACCCGCCTGAGCCCGGACGACGAGG CCTACGACATCGCCAAGCGCGGCGTCTCCGCCTTCATCGAGGAATTGCTCAAGCCGCAGAACGACGGCGAGCCGGTGAAGAAGGCGATGGTCGACCGGAT GATCGCCGAGATCGACGCCAAGCTCAGCACGCAGATGGACGAGATTCTCCATCATCCCGATTTCCAGGCGCTGGAGTCGGCCTGGCGCGGCCTGCAACTG CTGGTCGACCGCACCAACTTCCGCGAGAACATCAAGATCGAGATTCTCAGCGTTTCCAAGCAGGACCTGCTGGACGATTTCGAGGACTCGCCCGAGGTGA TGCAGTCCGGCCTGTACAAGCACATCTACACCGCCGAATACGGCCAGTTCGGTGGCCAGCCGGTCGGCGCCATCATCGCCAACTACTACATGTCGCCCAG TTCGCCCGACGTCAAGCTGATGCAATACGTCTCCAGCGTGGCCTGCATGGCCCATGCGCCATTCGTGGCGGCCGCCGGTCCGAAGTTCTTCGGCCTGGAA AGCTTCACCGGCCTGCCGGACCTGAAGGACCTGAAGGATCATTTCGAAGGCCCGCAGTTCGCCAAGTGGCAGAGCTTCCGCCAGTCCGAGGATTCCCGCT ACGTGGCGCTGACCGTACCGCGCTTCCTGCTGCGCACGCCCTACGATCCGGAAGAGAATCCGGTCAAGTCGTTCGCCTACAAGGAGACCGTGGCCAACAG CCACGAGCATTACCTGTGGGGCAACACCGCCTATGCCTTCGGCACCAAGCTGACCGACAGCTTCGCCAAGTATCGCTGGTGCCCGAACATCATCGGGCCG CAGAGCGGCGGTGCGGTAGAGGACCTGCCGTTGCACCACTTCGAGAGCATGGGCGAGATCGAGACCAAGATCCCCACCGAGGTGCTGGTGTCCGATCGCC GCGAGTACGAACTGGCCGAGGAAGGCTTCATTTCCCTGACCATGCGCAAGGGCAGCGACAACGCCGCGTTCTTCTCCGCCAGCTCGGTGCAGAAGCCGAA GTTCTTCGGCATCAGCGCCGAAGGCAAGGCCGCGGAGCTGAACTACAAGCTCGGCACCCAGTTGCCGTACATGATGATCGTCAACCGCCTGGCCCATTAC CTGAAGGTCCTGCAACGCGAACAGCTGGGGTCGTGGAAGGAGCGTACCGACCTCGAGCTGGAGCTGAACAAGTGGATCCGCCAGTACGTCGCCGACCAGG AAAACCCCAGCGCCGAAGTGCGCGGCCGTCGCCCGCTGCGCGCTGCACAGATCATCGTCAGTGACGTCGAGGGCGAGCCGGGCTGGTACCGCGTCAGCCT GAACGTGCGCCCGCACTTCAAGTACATGGGGGCGGACTTCACCCTGTCGCTGGTCGGCAAGCTGGACAAAGAGTAA
BLASTN Search  |  DIAMOND BLASTX Search (DIAMOND is faster than BLASTX)
DNA Sequence Downstream of Gene
GCGGAGCTTTCCATGACCGGATACGGCAGCCTGTTCGAGCGCCTGAACGGCGACGCGGATAAGCGCGTCGGCTGGAGCCGCGAGGTTTCCGCCATGGCGT CGGTGGCTGCCCATCTGGGCAAGATGCTCAGCACCCGGGCGGGCAGCGTGCAGACGCTGTCCGACTACGGGTTGCCCGATCTCAACGACATGCGCCTGAG CCTGCACGACTCCCTGAGCCAGGCCCGCTCGGCCATCGAAGGTTTCATCGAGGCTTACGAACCGCGCTTGAGCGACGTGCGTGTCGTTTCCCTGCCACGC GACAACGACCAGCTCCGCCTGGCCTTCAGCATCGAAGGGTTGCTGGAGGTGGAAGGTTTCAAGCGCCAGGTGAGTTTTTCCGCATGCCTGGATGGCAGCG GCCAGGTGAAGGTCAGCTAAGGAGGTTTCGATGTCCGGCAAACCCGCAGCCCGCGTTTCCGATCCCACCGCTTGTCCGCTCCCCGGGCACGGCAGCAATC
Amino Acid Sequence
>type VI secretion protein
MSTSAAQQGRNQNGEYNILDSIIAETRLSPDDEAYDIAKRGVSAFIEELLKPQNDGEPVKKAMVDRMIAEIDAKLSTQMDEILHHPDFQALESAWRGLQL LVDRTNFRENIKIEILSVSKQDLLDDFEDSPEVMQSGLYKHIYTAEYGQFGGQPVGAIIANYYMSPSSPDVKLMQYVSSVACMAHAPFVAAAGPKFFGLE SFTGLPDLKDLKDHFEGPQFAKWQSFRQSEDSRYVALTVPRFLLRTPYDPEENPVKSFAYKETVANSHEHYLWGNTAYAFGTKLTDSFAKYRWCPNIIGP QSGGAVEDLPLHHFESMGEIETKIPTEVLVSDRREYELAEEGFISLTMRKGSDNAAFFSASSVQKPKFFGISAEGKAAELNYKLGTQLPYMMIVNRLAHY LKVLQREQLGSWKERTDLELELNKWIRQYVADQENPSAEVRGRRPLRAAQIIVSDVEGEPGWYRVSLNVRPHFKYMGADFTLSLVGKLDKE
BLASTP | DIAMOND BLASTP (DIAMOND is faster than BLASTP)
Search for conserved domains in this protein at NCBI CDD site