Pseudomonas aeruginosa AZPAE14402, NQ60_RS24205
Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
Sequence Data
| Strain | Pseudomonas aeruginosa strain AZPAE14402 AZPAE14402_contig_23, whole genome shotgun sequence. [Details] | |
| DNA Sequence Upstream of Gene |
ACCCTCTACGGCTGCGACTCGATCAACGGCAACAACGTATCGAAATGGTGCGACGCGGCCTACGACAAGCTGGTCAAGGCTGCCAAGCGGGTCTCCGACC AGGACAAGCGCAGCGAGCTGTACAAGCAGGCCCAGCACATCCTCAAGGAGCAGGTGCCGATCACCCCGATCGCCCACTCCACCGTGTACCAGCCGATGAA CAAGTCGGTGCATGACTTCAAGATCAGCCCCTTCTCGCGGAACGCCTTCTATGGCGTAGCCAACCAGCCCTGATGCCGACGCCACCCCGGTCGTGAAACG ACCGGGGTGCAGAAGAACGGCACGACCCGTACTTCATTTCTTTGCTTTTCCTGCCCGTGTTCCAGAACGGCGCTGCGCGCGTTCCGCCAGGAGCGCTCGC CTCGCCGTATTCGACCGCCGCGCCCAGGCGCGGGCGAAACCGGCGCAAACCTGGTGGGTAAAACAGGTGCCATGACAACAATAAAGGGAGCAATCAGGTG
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| DNA Sequence for Gene |
>NQ60_RS24205
ATGAGATACCAACGAGTGACCGGCGCGACGCTGGGACTGGCCTTGATGGCATCGGCCGCGCCAGGCTGGGCGGCGGACGAGCAGGAAACCCCGCCGACCC CGGACAATCCCAGCTACGCCGCCCAGGTGCAGAGCATCCCCAGCGTGGAGAAACCGATCAAGGGCCAGGCCGGCGCCAGCGGGCTGTTCGAGGGGCAGAG CCTGACCCTGACCACTCGCAACTTCTATTCCCGGGAAAACATGAAGGACAGCTTCACCTTCCGCATTCCCAAGGCCGGCGGCGGCTCCCAGCGCATCCAC CAGCGCAACGCCTGGGTCCAGGGCACGGTGCTCAAGTACAGCTCGGGCTACACCCAGGGCAGCATCGGCTTCGGCTTCGACGTCGCAGCCTTCAACGAGA TCGCCCTGGAGCGCGGCAAGGGCCGCATCGGCGGCGGCGGCAACCGGACCCTGGCGAACAGCGATGGCGAGGCGATCGGCGAATGGTCCAAGCTGGGCGT CGCCAATATCCGCCTGCGCGCCTCGAACACCGAATTCAAGGCCGGTCGCTTCCTGGTCAACACTCCGGTGTTCAGCTATATCGACAACCGTGCCCTGCCC TCCAGCTTCACCGGCTTCGCCGTGACCAGCGAGGAGCTGGACAACCTCAGCCTGCAGGCCGGCAGCTTCCGCAAGGTCAGCCCGCGAACCGGTTCCGGCG ACGAGGACATGACCACCGAGTACGGCACCCGCCAGGTCAAGGGCGACCGCCTGAACTACCTGGGCGGCAACTACAAGCCGCTCGACGGGCTGGAGATCTC CCTCTATGGCTCGCATTTCCAGGACGTCTGGAACCAGTACTACCTGGGCGTGACCCACGACATCGGCGACCTCGAGAACGGCATCGCCCTGCGCACCGCC TTCAACGGCTACCACACCGGCGACACCGGCGCGCGCGAGGCCGGCTACATCGACAACGACACCTGGAGCCTGGCCTTCACCCTCGGCCATCGCGCCCACG CCCTGACCCTGGCCTACCAGCAGGTCGACGGCAACGAATACTTCGACTACGTGCACGAGACCTCGGCGATCTTCCTGGCCAACTCGATGCTGGCCGACTA CAACAGCCCCAACGAGAAGTCCGCGCAGGTCCGCTACGAGACCGACTGGAGCTACTACGGGGTCCCCGGCCTGAGCACCGGCATGTGGTACGTGAAGGGC TGGGACATCGACGGCACCCACTACGACGGCGATCGCAACGGTGCCTACGGCAACTACGCCGAGGTGCGCGCCCAGGACGGCGAGAAGCACCACGAGCTGG GCCTGATGGCGGCCTACAAGGTGCAGAACGGGCCGATCAAGGACAGCACCTTCAAGCTCACCTACATGATGCACAAGGCCAGCCAGAACCAGGTCGACGG CAGCGTCAACGAACTGCGCCTGGTCAGCACCTTCCCCTTCAACCTGCTGTAA
BLASTN Search
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DIAMOND BLASTX Search (DIAMOND is faster than BLASTX)
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| DNA Sequence Downstream of Gene |
ACCTGCGACAACCGGCGGCCCCGGCGACGGGGCCCACGAGGAGGACCCCATGCTCCATCCGTTGCTCCGACACCTGCCCCTGGCCCTGGCGCTATGCGCC GCCGGCGCGGCCCAGGCGAAGAACCTGGTGGTCTGCACCGAGGCCAGCCCGGAAGGCTTCGACATCGTCCAGTACACCGGCGCGGTGACCGCCGACGCCT CCGCGGAAACCGTGTTCAACCGCCTGCTCGCCTTCCGCCCCGGCACCACCGAGGTGATCCCGGGGCTGGCCGAGCGCTGGGACGTCAGCGCCGACGGACT GAGCTATACCTTCCACCTGCGCCCCGGCGTGAAATTCCATACCACCGACTACTTCATGCCGACCCGGAGCCTGAATGCCGATGATGTGCTGTGGACCTTC CAGCGCGCCCTCGATCCGAAGCATCCCTGGCATGCCTCGGCGCTGCGCGGCTACGCCTACTTCGACGCGATGGGTATGGGCGAGCTGATCAAGTCGGTGG
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| Amino Acid Sequence |
>porin
MRYQRVTGATLGLALMASAAPGWAADEQETPPTPDNPSYAAQVQSIPSVEKPIKGQAGASGLFEGQSLTLTTRNFYSRENMKDSFTFRIPKAGGGSQRIH QRNAWVQGTVLKYSSGYTQGSIGFGFDVAAFNEIALERGKGRIGGGGNRTLANSDGEAIGEWSKLGVANIRLRASNTEFKAGRFLVNTPVFSYIDNRALP SSFTGFAVTSEELDNLSLQAGSFRKVSPRTGSGDEDMTTEYGTRQVKGDRLNYLGGNYKPLDGLEISLYGSHFQDVWNQYYLGVTHDIGDLENGIALRTA FNGYHTGDTGAREAGYIDNDTWSLAFTLGHRAHALTLAYQQVDGNEYFDYVHETSAIFLANSMLADYNSPNEKSAQVRYETDWSYYGVPGLSTGMWYVKG WDIDGTHYDGDRNGAYGNYAEVRAQDGEKHHELGLMAAYKVQNGPIKDSTFKLTYMMHKASQNQVDGSVNELRLVSTFPFNLL
BLASTP |
DIAMOND BLASTP (DIAMOND is faster than BLASTP)
Search for conserved domains in this protein at NCBI CDD site
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