Strain | Pseudomonas aeruginosa strain AZPAE14403 AZPAE14403_contig_60, whole genome shotgun sequence. [Details] | |
DNA Sequence Upstream of Gene |
|
|
DNA Sequence for Gene |
>NQ61_RS31985
GCCAGGGCCAGACCCGCTGGAACACGTCGCGGCTACAGAGCGTGACCCAGCTCGGCGCCGAAGTCAGTGCCGGGCGGGACCTGAACGTCAGCGCCGGGCG CGACCTCAGCGCAGTGGCCAGCGCCCTCGAAGCGCGCCGCGACATCGCCCTCTCCGCCGGGCGCGACGTGACCCTGGCGGCGGCGGCGAACGAGGAGCAT GCCTACAGCAAGACCAGGAAGGTCACCTACCAGGAAGACAAGGTTGCCCAGCAAGGCACCCGCGTGGACGCCGGCGGCGACCTGGCGATCAATGCCGGAC AGGACCTGCGCCTGATCGCGAGCCAGGCCAGCGCCGGCGACGAGGCCTACCTGGTGGCCGGCGACAAGCTGGAACTGCTGGCCGCCAACGACAGCAACTA CTACCTGTACGACAAGAAGAAGAAAGGCGACTTCGGCCGCAAGGAAACCCGGCGCGACGAAGTCACCGACGTCAAGGCGGTGGGCAGCCAGATCAGCAGC GGCGGCGACCTCACCCTGCTCAGCGGCGGCGACCAGACCTACCAGGGCGCGAAGCTGGAATCGGGCAACGACCTGGCCATCGTCAGCGGCGGCGCGGTGA CCTTCGACGCGGTGAAGGACCTGCACCAGGAGAGCCATGAGAAGAGCAAGGGCGACCTGGCGTGGCAGTCGTCGAAGGGCAAGGGCCAGACCGACGAAAC CGTGCGCCAGAGCCAGATCGTGGCCCAGGGGAATCTGGCGATCAAGGCCGTGGAAGGGCTGAAGATCGACCTCAAGCATATCGACCAGAAGACCGTGAGC CAGACCATCGACGCGATGGTGCAGGCGGATCCGCAACTGGCGTGGCTGAAGGAGGCCGAGCAGCGCGGGGATGTGGACTGGCGCATGGTGCAGGAGGTGC ACGATAGCTGGAAGTACAGCAACTCGGGGCTGGGGGCTGCGCCGTCACTGGCCATTGCCATCGTTGCGGCTGCTTACCTCGGCCCGGTGTATGGCGCAAT GGCCAGCAACCTCGCCATTGGCACCATCAACAATGGCGGTGACCTTGGCAAGGGGCTGCAACAGGCCACCAGCGCTGACAGTCTGAAAGGGTACGCCATC GCAGCGGCCACGGCTTATCTCGTCAGCCCGCAGTTGGACAAGGCATTCGGCGTATCCAGTGACAACATCAACAAAGTCACCAAAGGATTCAAGCTCAGCA CAGTTGAGGGAATCGGTGGATTTGCTGCCTACAGCATTGCCCAAGGCTTTGCTCAATCGGTCATGCAGCAGGCCGCCTATGGCGGCAGCTACATCGACAA CCTCGGTAATGCCATGGCAGGTCAGGCGCGCAACCTGGGAATGGCGGTAGGTTTCAATTTCATTGGCGACTCGGTCAAATACCCTGATGGCAGCCCGCCG AAAATCATGGCTCACGCCCTGATGGGAGGTCTGCTGGCCGAAGCCTCCGGCAGTGACTTCAAGACTGGAGCGGCGGCCGCTGGTGCCAACGAGGCCATGA TCAACCTCCTTGGGAAAATGGTAGGTGGCGATCAAAACCTCGAACTGATGGCCTCGCAACTCGTTGGCGTAGCCGCGGCAAGTGCGGTCAATGGCGATGT GAGTCTGGGCGCCGAGATCGCCAAAAGCGGGACGGCGTACAACCGGCAGCTACACCCAGATGAAATCAAATTCGCATCGGATGTGGAGCGCGTCAAACGT TATGCCCAGGAAAATGGGCTGAGCGAGGACACCGCCCGCAAAGAGCTTCTCAGCACGGCCGCCATGATGGTGGACAATGGCTGGAACCAGGCCTTGGCCG GCACAGACATCAACGCTGCCCGGGCTGCTCAGTATCTGCGTACGGAGCTGGGCACAGGCCCGGACAGCAATCTCTTCCAGGTGACCCAGGCTGACTACTA CAACGAGCGGGTGGGGCTGACGGCGCTATTCAAGAACAAGGAGGCCCTGACCAGCGTTCTGGAAAACATAGCCCTAGCGAATCCCGCGAGCTATACGAGG GACCCCGCGAACCGTGCGGAAGTGCTGAATGCCAAAGGTGAAGGTAGCCAAGCGGGCTTTGGGCTGGCACTGGAAGGGATCGTCAGCGCGCCTTCAAAAA CTGCCTTGTGGTTGATGGGTGCGCTAACCTGTTCAAGCTGTGCGGAGCGGGATATCCAGAACGCTTGGAACTCGGTTGCCTCGTTACCTGAAGACATCCG TATGAAAGGCTATCTGGATGCCTTGCACACCATGCAAGGCCAGGGTGCCAGCGTGGTGCGGGACAACGCCGCGAGTTCGACTGCATTGGGAGTTGAGGTT GGGCTGGCCATTGATGGAGGGTTGGCAGGGGCAGGCAAGGGCGTCGTTACGGATGGTCCGAAAGGAATACTTACACTGAAAGATTTTCCTGATGTCTCTA CCAAGATAAGCCAGAAGCAGCTTCGCCATATTGCTGGAACACAGCAGCTTGAGGCACGGGGAGGCGGTGGTTTCTTAAACAGTGTCTCTGATGCTCAAAA AGTGCTTGATGCCTACCATACCGGCCAAGTGAAAATCCTAGGGAGAAATGCTCAGGGATTCCCAGTAGTCAAGTTTGAGGGCGTTACTGGAACTAACGTT AATCTCGGTGTTGGTATAACTGATCAGGCAACCAATGTATTTATTATCAAGGGCACAAAGAGTCCAAGTATTGTCCCTACAAATCCAAACTGGAGTCCCA AATGA
BLASTN Search
|
DIAMOND BLASTX Search (DIAMOND is faster than BLASTX)
|
|
DNA Sequence Downstream of Gene |
GTAGCCAGCCAACGTTGGAAGAATGGAATTTTCAAGTGTTAATGCTAATTCAAGCGTTGGTAGGTGCGATATCTGCCAATTTTAGAATGATTGCATTGTT ATGGGATGGCGATGAGTGGGTATTGAGATTTTATCTTGAAGAGAGCAACGAAGAGGACGTTGAGGAGATTGAGGATGTTGTTTGCCAATATACGGCATAT CAGGGCTCTAGTTTGAGATGCAGGTCTGAGTTGATCGTGGGGCGTGAACGCCTTCCGGGGCTTTCGGAGGTGGGTAGGGTTGTATACCGTCGCAGAGAGT CTTTTGATATTTAGTTGGGGCAAAAGGTAGCTCCGGCGCAGAAAGTGCTATCAATCAAGGCAGGCTTAATTCTCAGCTCCTGTCTGAGGAGGTTGCGAAT GGCCACGCGTTCCAGAAACATTTAGTCGAACGGCAAGAGTTTGTTGATCTTGCGCCAACAGCATAAAGGGGACAGATTAACAGCATAAAGGGGACACATA
|
|
Amino Acid Sequence |
>filamentous hemagglutinin
QGQTRWNTSRLQSVTQLGAEVSAGRDLNVSAGRDLSAVASALEARRDIALSAGRDVTLAAAANEEHAYSKTRKVTYQEDKVAQQGTRVDAGGDLAINAGQ DLRLIASQASAGDEAYLVAGDKLELLAANDSNYYLYDKKKKGDFGRKETRRDEVTDVKAVGSQISSGGDLTLLSGGDQTYQGAKLESGNDLAIVSGGAVT FDAVKDLHQESHEKSKGDLAWQSSKGKGQTDETVRQSQIVAQGNLAIKAVEGLKIDLKHIDQKTVSQTIDAMVQADPQLAWLKEAEQRGDVDWRMVQEVH DSWKYSNSGLGAAPSLAIAIVAAAYLGPVYGAMASNLAIGTINNGGDLGKGLQQATSADSLKGYAIAAATAYLVSPQLDKAFGVSSDNINKVTKGFKLST VEGIGGFAAYSIAQGFAQSVMQQAAYGGSYIDNLGNAMAGQARNLGMAVGFNFIGDSVKYPDGSPPKIMAHALMGGLLAEASGSDFKTGAAAAGANEAMI NLLGKMVGGDQNLELMASQLVGVAAASAVNGDVSLGAEIAKSGTAYNRQLHPDEIKFASDVERVKRYAQENGLSEDTARKELLSTAAMMVDNGWNQALAG TDINAARAAQYLRTELGTGPDSNLFQVTQADYYNERVGLTALFKNKEALTSVLENIALANPASYTRDPANRAEVLNAKGEGSQAGFGLALEGIVSAPSKT ALWLMGALTCSSCAERDIQNAWNSVASLPEDIRMKGYLDALHTMQGQGASVVRDNAASSTALGVEVGLAIDGGLAGAGKGVVTDGPKGILTLKDFPDVST KISQKQLRHIAGTQQLEARGGGGFLNSVSDAQKVLDAYHTGQVKILGRNAQGFPVVKFEGVTGTNVNLGVGITDQATNVFIIKGTKSPSIVPTNPNWSPK
BLASTP |
DIAMOND BLASTP (DIAMOND is faster than BLASTP)
Search for conserved domains in this protein at NCBI CDD site
|