Strain | Pseudomonas aeruginosa strain AZPAE14404 AZPAE14404_contig_13, whole genome shotgun sequence. [Details] | |
DNA Sequence Upstream of Gene |
GTTGGCAAGGAGCTGCGGCATCGACCCGTCCGGCCTGGCCGCCACCGTCGCCGAATACAACCGCCACGCCCGCGAGGGCCGCGACCCGGCGTTCGGCCGC GGCGGCACGGCATTCAACCGCAAGCAGGGCGACCCGGCGTATCCGGGGCCGAATCCCTGCGTCGCCCCCATCGAACGCGGACCGTACTACGCGGTGCAGG TCGAGCCCGGCTGCTTCGGTACCTTCGCCGGGCTGAAGACCGACGCCCAGGCCCGCGTGCTGGACGGCGGCGGCCAGCCGATCCCCGGCCTGTACGCGGC GGGCGCGGACATGGCGAGTCTGTTCGCCGGCCACTATCCCTCCGGCGGCATCAACCTGGGACCAGCGCTGACCTTCGGCTACATCGCCGGCCGCCATATC GCCGGCGCCATCGGCTACGAGCAGGAGCAAGCGCAGCGCGGTTGAACGTTCCAACGGGCGCAGCGGCCTAAACAGGCAAGCTTTCCTTCGGAACCCAAGC
|
|
DNA Sequence for Gene |
>NQ62_RS20800
ATGAGCGCAGCGCCACCGGAGATCCCCGCCCTGCCCGCCGGCCTCTGCTACGTCGACGACCGCCAGCCGGGCATCCGTCGACGCCGGCAGGGCAAGCGCT TCGTCTATTTCGATGCCGACGGCCAGCGCATCGGCGACGCCGAGGAGATCCGCCGGCTGGACAAGCTGGCCATTCCGCCGGCCTATCGCGAGGTCTGGAT CTGTCCCGACCCCAACGGCCATCTCCAGGCCACCGGCCGCGACGCCCGTGGGCGCAAGCAGTACCGCTACCACCCGCGCTGGCGCGAGGTACGCGATGCC GACAAGTACGAGCGCCTGCTGCGCTTCGGCCAGGCGCTGCCGCGGCTGCGCCGGCACATCGACGCCCAGTTGCGCCTGCCCGGCCTCGGTCGCGACAAGG TGGTGGCCCTGGCGGTGGCGCTGCTCGACGCCACCCTGATCCGCGTCGGCAACCACCGCTACGCCCGCGACAACCGCTCCTACGGCCTGACCACCCTGCG TACCCGGCACGTCGACGTGAACGGCAGTCGCATCCGTTTCCGCTTCAAGGGCAAGAGCGGCATCGAGCACGACGTCAGCCTGGAGCATCCGCGCCTGGCG CGGGTGCTGCGGCGCTGCCTGGAACTGCCCGGCCAGGACCTGTTGCAGTACCTGGACGAGGACGGCCAGCCGCACCGCATAGGCTCCCACGACATCAACG AGTACCTGCGCCGGCACACCGGCGAGGATTTCAGCGCCAAGGACTACCGTACCTGGGCCGGCAGCGCGCTGGCGCTGGAGCGCCTGCGGCGTGCCGAAGC CGACGGGCTTGGCGCGGTGGTCGCGGAGGTCGCCGCCGAATTGGGCAACAGCGTGGCGATCTGCCGGCAATGCTACATCCACCCGGCGATCATCGAGGCC TACCAGGCCGGGCAACTGGGCCAGCTCAGGCGCGCCCGCAAGCGCCGCTGGCTGAGCGCCGAGGAAGCGACCCTGCTGGCCTTCCTCGACACGCCCGGCT GA
BLASTN Search
|
DIAMOND BLASTX Search (DIAMOND is faster than BLASTX)
|
|
DNA Sequence Downstream of Gene |
TCAGTTGCCCGGATGCGGATCGATGCCGTGCCGGCGCAGCAGGCCGAGCAGGCGGCCAATCTCGGTCTGGCAGGCTTCCAGTTCCTTGCGCAGGGTGTGT TCGCGGCGCTGCTGCTCCAGCTTCATGCGTTCGAGTTCGGCGCGCGCCTCGCGGCGGATCTGCCGCTCGCGCTCCTTGTCGGAATGCTCGGCGCCGAGGG CCTCCTCGGCCTTGCGCGCGCGGTACTCGCGCATCCGCTGGGCGGCCGACTTGGCCTTGCCGCTCGGCTTGGGGCCGGGTTTGCTGGCTTTCATGAACGC CTCCATCTGCGTAACGTTACGCAATCAGAATAGCGTAACGTTACGCAGATAAACAGGGTCTATGCTTAGAGCGGCGGGGCCGAGCGCAGCATCACCGACT TCAGTGCGAAGGCCGACTTGATGCCAGCCACGCCGGGAATGCAGGTCAGGGTATTGGTGAGGAACGCCTGGTAGGCGGCGAGATCCTTGACCACAACCCG
|
|
Amino Acid Sequence |
>DNA topoisomerase
MSAAPPEIPALPAGLCYVDDRQPGIRRRRQGKRFVYFDADGQRIGDAEEIRRLDKLAIPPAYREVWICPDPNGHLQATGRDARGRKQYRYHPRWREVRDA DKYERLLRFGQALPRLRRHIDAQLRLPGLGRDKVVALAVALLDATLIRVGNHRYARDNRSYGLTTLRTRHVDVNGSRIRFRFKGKSGIEHDVSLEHPRLA RVLRRCLELPGQDLLQYLDEDGQPHRIGSHDINEYLRRHTGEDFSAKDYRTWAGSALALERLRRAEADGLGAVVAEVAAELGNSVAICRQCYIHPAIIEA YQAGQLGQLRRARKRRWLSAEEATLLAFLDTPG
BLASTP |
DIAMOND BLASTP (DIAMOND is faster than BLASTP)
Search for conserved domains in this protein at NCBI CDD site
|