Pseudomonas aeruginosa RP73, M062_03880 (prpB)
Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
Sequence Data
| Strain | Pseudomonas aeruginosa RP73, complete genome. [Details] | |
| DNA Sequence Upstream of Gene |
GCGGGTGGTGTCGCTGAGCCACGCCGAGCTGATCGAGCTCTACGAGATCCGCGAGTCCCTGGAAGGCATGGCCTGCCGACTGGCCGCCGAGCGCATGAGC CAGGCCGAGATCGACGAGTTGCGCCGGGTGCTCGACACCCACGAGCGCGACGAGGCGTTCCAGGCCGGGCGCGGCTATTACCAGCAGGAAGGCGACTACG ACTTCCACTACCGGATCATCCAGGGCAGCGGCAACGCCACTCTCACCCGCATGCTCTGCGGCGAGCTCTACCAACTGGTGCGGATGTACCGCATCCAGTA CTCGACCACGCCGAACCGGCCGCGCCAGGCCTTCGCCGAACACCACCGCATTCTCGACGCCATCGCCGACCGTGACGGCGAACTGGCCGAGCTGCTGATG CGCCGCCACATCAGTGCGTCGCGCCGCAATATCGAGCGCCAGCTGGAACCCCAGCCGGCGAAGCTCGCCTCCGCTTCCTCCACCGTCTAAGAGGTCCGTG
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| DNA Sequence for Gene |
>M062_03880
|prpB
ATGAGCCAGACGTCCCTTACCCCCGGCCAGCGCTTCCGCGAAGCCGTGGCCACCGAACACCCGCTGCAGGTGGTCGGCACCATCAACGCCAACCACGCCC TGCTGGCCAAGCGCGCCGGCTTCAAGGCCATCTACCTGTCCGGCGGCGGCGTCGCCGCCGGTTCCCTGGGCCTGCCGGACCTGGGTATCAGCGGCCTCGA CGACGTGCTCACCGACGTGCGCCGGATCACCGACGTCTGCGACCTGCCGCTGCTGGTGGACGTCGACACCGGCTTCGGCTCCTCGGCGTTCAACGTCGCC CGCACGGTGAAGTCGATGATCAAGTTCGGCGCCGCCGCGATGCATATCGAGGACCAGGTCGGCGCCAAGCGCTGCGGCCATAGGCCGAACAAGGAGATCG TCTCGCAGCAGGAGATGGTCGACCGCATCAAGGCCGCCGTCGATGCCCGCAGCGACGACTCCTTCGTGATCATGGCGCGCACCGACGCGCTGGCCGTGGA AGGCCTGCAGGCCGCCATCGACCGCGCCTGCGCCTGTGTCGAGGCCGGTGCCGACATGATCTTCCCGGAAGCCATGACCGAACTGGCCATGTACAAGGAA TTCGCCGCCGCGGTGAAGGTGCCGGTGCTGGCCAACATCACCGAGTTCGGCGCCACCCCGCTGTTCACCACCGACGAACTGGCCTCCGCCGACGTGTCCC TGGTGCTCTACCCGCTGTCGGCCTTCCGCGCCATGAACAAGGCGGCGGAGAACGTCTACACCGCGATCCGTCGCGACGGCACCCAGAAGAATGTGATCGA TACCATGCAGACCCGCATGGAGCTGTACGATCGCATCGATTACCACAGCTTCGAGCAGAAGCTCGACGCGCTCTTCGCGCAGAAGAAGAACGCCTGA
BLASTN Search
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DIAMOND BLASTX Search (DIAMOND is faster than BLASTX)
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| DNA Sequence Downstream of Gene |
ACATCGAGCCCGGCGTGCGCCTGAGCGCCGGTCCGCGAACCCCGTGAAACCGAGTTGCAGCATCCAGAAAAAGTTCAAGAAAGGAGAGAGCAATGGCTGA AGCAAAAGTACTGAGTGGCGCCGGCCTGCGTGGCCAGGTGGCCGGTCAGACAGCCCTGTCCACCGTCGGCCAGGAAGGCGCCGGCCTGACCTACCGTGGC TACGACGTCCGCGACCTGGCGGCGGCGGCGATCTTCGAGGAAGTCGCCTACCTGCTGCTCTACGGCGAACTGCCGAACAAGCAACAGCTCGACGCCTACC TGAAGAGGCTCCAGGGCCAGCGCGACCTGCCGCAGGCGCTGAAGGAAGTTCTCGAACGGATTCCCAAGGACGCCCACCCGATGGACGTGATGCGCACTGG CGCCTCGGTCCTCGGCACCCTGGAACCGGAGCTGAGCTTCGACCAGCAGCGCGACGTCGCCGACCGCCTGCTTGCCGCCTTCCCGGCGATCATGACCTAC
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| Amino Acid Sequence |
>2-methylisocitrate lyase
MSQTSLTPGQRFREAVATEHPLQVVGTINANHALLAKRAGFKAIYLSGGGVAAGSLGLPDLGISGLDDVLTDVRRITDVCDLPLLVDVDTGFGSSAFNVA RTVKSMIKFGAAAMHIEDQVGAKRCGHRPNKEIVSQQEMVDRIKAAVDARSDDSFVIMARTDALAVEGLQAAIDRACACVEAGADMIFPEAMTELAMYKE FAAAVKVPVLANITEFGATPLFTTDELASADVSLVLYPLSAFRAMNKAAENVYTAIRRDGTQKNVIDTMQTRMELYDRIDYHSFEQKLDALFAQKKNA
BLASTP |
DIAMOND BLASTP (DIAMOND is faster than BLASTP)
Search for conserved domains in this protein at NCBI CDD site
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