Pseudomonas aeruginosa AZPAE14509, NQ74_RS13615
Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
Sequence Data
| Strain | Pseudomonas aeruginosa strain AZPAE14509 AZPAE14509_contig_15, whole genome shotgun sequence. [Details] | |
| DNA Sequence Upstream of Gene |
CCAGCGCGAGGGCGACGCCCTCGAACTGGCCCGGCATTTCGCCGAACGCGCCTGCGTGTTCCTGCGCCGCGCGCCGCTGGGCTGGTCCGCGGAAGCGCTG GAACTGCTCGACGGCTATGGCTTTCCCGGCAACGTTCGGGAGCTGAAGGGACTGGTGGAATGCGCGGTACTGCTCTGCGAAGGCGATGTGCTGCTGGCCG AACACTTTTCCCTGCGCGCGCCCCCGGAAGCGGAGGCGCCGCTCAAGCTGCGCGAGCACCTGGAGCAGATCGAGCGCGACCTGCTGCTCGCCTGCCTGCG CAGGAACGCTGGCAACCAGACCCTCGCTGCGCGCGAACTGGGTCTGCCGCGCCGAACCCTGATCTATCGCATGGGACGCCTGAACATTCATTTCGGCGAT CCCCGGACCTGAAGCCCATGATCGAGATTTCCTTCCATCCAGCCCTGCCGGGCGCGCGCCTGGAGCGCGGCGTCCGCGGCCCTTCCATGGAGACTCCCTG
|
|
| DNA Sequence for Gene |
>NQ74_RS13615
ATGCCTGTTCGTCACTGGCCCGCCGTGCTTCTGGCCCTGGCCGTCCTCTGCGGCCTCGCCGGTTGCAGCGGCAACTACAAATTCAACGACGGCGACTATC GCCCGCTTGGCGATCCGCAGGCGGTCAATCGCGGCAAGTGA
BLASTN Search
|
DIAMOND BLASTX Search (DIAMOND is faster than BLASTX)
|
|
| DNA Sequence Downstream of Gene |
CCGCAAGGAGCGATCTCATGGAACTGGTATTGGAAATGCTCAGCGCCAAGCAATTCGTACCGACGGAGCTGTGCAGCAAGACCTTCGGCAGGAACGGCGG CCTCATCGGCCGCGGCGGTGAGTGCGACTGGGCGATTCCCGATCGCAAGCGGCACCTGTCCAAGCAGCATGCGCGGGTCAGCTATCGCAACGGCGCGTTC TACCTGACCGACACCAGCAGCAACGGCATCCGCGCCGGCAACGGCAGCCGCCTGCCGCATGGCGAGCCGCAGCGCATCGAGCAGGACAGCGTCTTCCTGC TCGGCGACTTCGAGATCCGCGCGCGGCTGCTGCGCGAGCCCGACGAGTTCGCCATGGACGTCGGGCGGCCGCAGCCGGCGGGCAGCATCATTCCGGACGA TGCCTTCCTGGCCCTCGATCCGTTGCAGGCGCTCGACCAGGACGGTGCAGATGCCTACGAACTCGACGACCTGAGCGCGATCGCCCAGCCCAGCCAGGAG
|
|
| Amino Acid Sequence |
>type VI secretion protein
MPVRHWPAVLLALAVLCGLAGCSGNYKFNDGDYRPLGDPQAVNRGK
BLASTP |
DIAMOND BLASTP (DIAMOND is faster than BLASTP)
Search for conserved domains in this protein at NCBI CDD site
|