Pseudomonas aeruginosa B136-33, G655_21050

Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown

Gene Ontology

Ontology Accession Term GO Evidence Evidence Ontology (ECO) Code Reference Comments
Biological Process GO:0006355 regulation of transcription, DNA-templated
ISM
Inferred from Sequence Model
Term mapped from: InterPro:PF00989
 ECO:0000259
match to InterPro signature evidence used in automatic assertion

Functional Classifications Manually Assigned by PseudoCAP

Motility & Attachment Other B136-33 genes in this class

Functional Predictions from Interpro

Analysis Accession Description Interpro Accession Interpro Description Amino Acid Start Amino Acid Stop E-value
SUPERFAMILY SSF55785 PYP-like sensor domain (PAS domain) IPR035965 PAS domain superfamily 232 361 3.32E-18
Gene3D G3DSA:3.20.20.450 EAL domain IPR035919 EAL domain superfamily 549 799 8.2E-83
Gene3D G3DSA:3.30.70.270 - IPR043128 Reverse transcriptase/Diguanylate cyclase domain 364 537 5.2E-57
SMART SM00091 pas_2 IPR000014 PAS domain 245 311 3.4E-7
CDD cd01948 EAL IPR001633 EAL domain 553 797 3.27189E-86
Gene3D G3DSA:3.30.450.20 PAS domain - - 233 361 4.2E-20
Pfam PF00563 EAL domain IPR001633 EAL domain 554 792 6.8E-61
FunFam G3DSA:3.30.70.270:FF:000001 Diguanylate cyclase domain protein - - 369 537 3.3E-47
SUPERFAMILY SSF141868 EAL domain-like IPR035919 EAL domain superfamily 553 796 4.84E-73
Pfam PF00989 PAS fold IPR013767 PAS fold 251 360 7.7E-12
NCBIfam TIGR00229 JCVI: PAS domain S-box protein IPR000014 PAS domain 251 369 3.8E-14
NCBIfam TIGR00254 JCVI: diguanylate cyclase (GGDEF) domain IPR000160 GGDEF domain 370 534 1.7E-43
CDD cd01949 GGDEF IPR000160 GGDEF domain 375 533 2.44555E-61
Pfam PF00990 Diguanylate cyclase, GGDEF domain IPR000160 GGDEF domain 374 531 3.0E-45
SUPERFAMILY SSF55073 Nucleotide cyclase IPR029787 Nucleotide cyclase 379 537 2.35E-49
PANTHER PTHR33121 CYCLIC DI-GMP PHOSPHODIESTERASE PDEF - - 48 795 0.0
SMART SM00052 duf2_2 IPR001633 EAL domain 547 797 2.6E-69
SMART SM00267 duf1_3 IPR000160 GGDEF domain 363 535 2.5E-64
CDD cd00130 PAS IPR000014 PAS domain 254 360 4.92852E-10

Search for additional functional domains at the NCBI CDD database website. Go to this protein's amino acid sequence and follow the link.