Pseudomonas aeruginosa B136-33, G655_20285

Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown

Gene Ontology

Ontology Accession Term GO Evidence Evidence Ontology (ECO) Code Reference Comments
Biological Process GO:0051349 positive regulation of lyase activity
ISS
Inferred from Sequence or Structural Similarity
Term mapped from: PseudoCAP:PA1003
 ECO:0000249
sequence similarity evidence used in automatic assertion		 14739337
Biological Process GO:0034762 regulation of transmembrane transport
ISS
Inferred from Sequence or Structural Similarity
Term mapped from: PseudoCAP:PA1003
 ECO:0000249
sequence similarity evidence used in automatic assertion		 19497948
Molecular Function GO:0000976 transcription regulatory region sequence-specific DNA binding
ISS
Inferred from Sequence or Structural Similarity
Term mapped from: PseudoCAP:PA1003
 ECO:0000249
sequence similarity evidence used in automatic assertion		 16735731
Biological Process GO:0043902 positive regulation of multi-organism process
ISS
Inferred from Sequence or Structural Similarity
Term mapped from: PseudoCAP:PA1003
 ECO:0000249
sequence similarity evidence used in automatic assertion		 15686549
Molecular Function GO:0003700 DNA-binding transcription factor activity
ISM
Inferred from Sequence Model
Term mapped from: InterPro:PF00126
 ECO:0000259
match to InterPro signature evidence used in automatic assertion
Biological Process GO:0006355 regulation of transcription, DNA-templated
ISM
Inferred from Sequence Model
Term mapped from: InterPro:PF00126
 ECO:0000259
match to InterPro signature evidence used in automatic assertion

Functional Classifications Manually Assigned by PseudoCAP

Biosynthesis of cofactors, prosthetic groups and carriers Other B136-33 genes in this class
Transcriptional regulators Other B136-33 genes in this class

Pathways

Database Xref Pathway Version Evidence PMID
KEGG psg02024 Quorum sensing 81.0+/01-23, Jan 17 ECO:0000249
sequence similarity evidence used in automatic assertion
KEGG psg02025 Biofilm formation - Pseudomonas aeruginosa 81.0+/01-23, Jan 17 ECO:0000249
sequence similarity evidence used in automatic assertion

Functional Predictions from Interpro

Analysis Accession Description Interpro Accession Interpro Description Amino Acid Start Amino Acid Stop E-value
FunFam G3DSA:3.40.190.290:FF:000026 Transcriptional regulator MvfR - - 94 309 0.0
Pfam PF03466 LysR substrate binding domain IPR005119 LysR, substrate-binding 139 292 2.5E-14
Pfam PF00126 Bacterial regulatory helix-turn-helix protein, lysR family IPR000847 Transcription regulator HTH, LysR 6 64 1.6E-10
Gene3D G3DSA:3.40.190.290 - - - 94 309 1.5E-102
PANTHER PTHR30579 TRANSCRIPTIONAL REGULATOR - - 1 301 2.7E-70
Gene3D G3DSA:1.10.10.10 - IPR036388 Winged helix-like DNA-binding domain superfamily 4 81 1.7E-14
SUPERFAMILY SSF46785 Winged helix DNA-binding domain IPR036390 Winged helix DNA-binding domain superfamily 3 78 7.07E-13
SUPERFAMILY SSF53850 Periplasmic binding protein-like II - - 140 296 1.16E-18
CDD cd05466 PBP2_LTTR_substrate - - 102 286 1.81721E-14

Search for additional functional domains at the NCBI CDD database website. Go to this protein's amino acid sequence and follow the link.