Strain | Pseudomonas aeruginosa strain AZPAE12140 AZPAE12140_contig_8, whole genome shotgun sequence. [Details] | |
DNA Sequence Upstream of Gene |
CCACCTTGCCCGACGGGTAGGCATCCTTGATCTCCATGCACTGGCTGTCGACCTTGCGCTTGACCAGGTTGGAACGCAGGATGTCGAGCATCTGCTCGAG CATGAAATCGGCTTCGGCGGTGAGGGTCACCGACTTGTCCTTGGCTTCGAAACTGCATTTGCCTTTCAGGTCGAAACGGCGATCCAGTTCCTTGATGGCG TTGTCCACGGCGTTGGTCAACTCGTGTTTGTCCAGTTCGGACACCACGTCGAACGAAGGCATGTCATCTCTCCAGATGGACGGCGCGACAGGGTTCACAG ACGGAACCGCGCCTGGCTTGACGGTAAAAAATGCCCGCCCATTATAACCGAGCCCTCGCGAGCGAATGCCCGCCGGTGTGGCGGAGACCGACGATTTCTT CCCGATGGCGCGCGCGACCGCGGCCGGGACCCGGCCTCCCGCGACGAACCGGGCCCTTGCCGGCAGCGTACCGGCGCCCATCCTCTTCTCGAGTCCGTTC
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DNA Sequence for Gene |
>NQ02_RS07045
ATGCCCAACCCCGATCTCAGCATCCTGGTCGTCGACGACGCCAAGTTTTCCAGCGCCATGATCGGCCGCGCCCTCAGCCAGGCCGGCTACCAGGACATCC GCTTCGCCAGCAGCGCCAGCGAGGCCCTGCAGCAGCTCGAACAACGCCCGGTCAGCGTGCTCCTGGCCGACTGGCTGATGCCGGAGATGGACGGCCTGGA ACTGACCGCCCGGGTCCGCCAACTGGACGAAAGCATCAACCACTACACCTACATCGTCCTGCTCACCGGCAAGGAAGGCGAGAACGTCCTCGGCGAGGCC TTCGACCGCGGCGTCGACGACTTCGTCAGCAAGGCCGCGATGAACGAGCAACTGGTGCCGCGCATCTACGCAGCCGACCGCCTGTGCAACACCCTGCAAC GGTTGCTGGTGGAAAACCGCCTGCTCACCGAAAACATCGCGCGGATGGAAGAACGCAACCTGGTGGATACCCTCACCGGCCTCGGCAATCCCCGCTACCT GCGACAGAAGCTGGCCGACAGCCTGCGCCAGGTGGAAACCCGCGGTGGAGCGCTGTGCTACCTGCTGGTCGGCATGCCCGAGGCACCGGTCCTGCGCCAG CGGCACGGCGAGGCCTTCCATCGCGAGCTGCTGCTCGGCGTGGCCAGGCGCCTGCAACAGCTGGTCCGGCCGCTGGACGTGCTGGTGCGCCTGGACGAGC AGCATTTCGCCCTGATCACCCTGGTGGAGGACCTGCACGAATGCTCGTCGAGCAGCTTCAAGCGGCTGCACGACGGGCTCAACCTGAAGGCCTTCAAGAC CAGCGAAGGCTTCATCAGCCTGAAAGCCGGCATCGCCATGCTCGGCCTCGACAGCGGGGCATTGCCGCTGGGCATCGACGAACTGCTGCAGCGCACCGAG GCCCTGTTGCCCGATGCCTATGCCAGCGGCAGGATCGCAACCTGCCGGCTACCGGCACTGCGCTAG
BLASTN Search
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DIAMOND BLASTX Search (DIAMOND is faster than BLASTX)
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DNA Sequence Downstream of Gene |
ACTTCGCCCTATCGTCAGCCATTCGCAGTAGCCACCATGACCTGGCATATCCTCGGCGCCGGTAGCCTCGGCAGCCTCTGGGCCGCGCGCCTCGGGCGCG CCGGCCTGCCCGTCCGCCTGATCCTGCGCGACCGCCAGCGCCTGCGCCGCTACCAACAGGCCGGCGGACTGAGCCTGGTGGAAGACGGCCAGGCCAGCCT CTACCCGATCGCCGCGGAAACCCCGGACGGCGGGCAACCCATCCAGCGCCTGCTGCTGGCCTGCAAGGCCTACGACGCGGAGGAAGCCGCCTCCAGCGTG GCCCATCGCCTGGCCGGCAACGCCGAACTGCTGTTGCTGCAGAACGGCCTGGGCAGCCAGCAGGCGGTCGCCGCCCGCCTGCCGCGCAGCCGCTGCCTGT TCGCCTCCAGCACCGAAGGCGCGTTCCGCGATGGCGATTTCCGCGTGGTCTTCGCCGGCCGGGGGCACACCTGGCTCGGCGATCCGCGCGACACAAGCGC
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Amino Acid Sequence |
>diguanylate cyclase
MPNPDLSILVVDDAKFSSAMIGRALSQAGYQDIRFASSASEALQQLEQRPVSVLLADWLMPEMDGLELTARVRQLDESINHYTYIVLLTGKEGENVLGEA FDRGVDDFVSKAAMNEQLVPRIYAADRLCNTLQRLLVENRLLTENIARMEERNLVDTLTGLGNPRYLRQKLADSLRQVETRGGALCYLLVGMPEAPVLRQ RHGEAFHRELLLGVARRLQQLVRPLDVLVRLDEQHFALITLVEDLHECSSSSFKRLHDGLNLKAFKTSEGFISLKAGIAMLGLDSGALPLGIDELLQRTE ALLPDAYASGRIATCRLPALR
BLASTP |
DIAMOND BLASTP (DIAMOND is faster than BLASTP)
Search for conserved domains in this protein at NCBI CDD site
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