Pseudomonas aeruginosa AZPAE12140, NQ02_RS02540
Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
Sequence Data
| Strain | Pseudomonas aeruginosa strain AZPAE12140 AZPAE12140_contig_2, whole genome shotgun sequence. [Details] | |
| DNA Sequence Upstream of Gene |
GCGCGGCCGATATCCGCCTCGTTGCCGTAGATCTGCGCGGTATCGATGGCGCGATAACCCAGCTCGAGGGCGCTGCGCACCGAGTCGACGACGACCTGGC CGGTGAGGCGGAAGGTGCCGAGACCGAAGGACGGGAGGGGGTGGATGGTGGAAGACATGGCTGCGCTCCGTGGGCGGGATGACTCGAAGGAAGCGCAGTG TGGCGGCTTACATCTCTTCGATTAAGGCCCGAATCGAGCAAATTCATTTGCGTTGGAATCACGAATCCAGGCGGCCTTCACGGGAGGTATCCAGCGGAAA TTCCCGCCAGCCGCTGGCAGAACGCAGTTCATCGGATTCCCGCGAATACTACTGATAACGATAATCTATATCATTTACTCCATTTTTACATTTACATACA CTTGCCCCGCCGCGAATTCCTACGCCGGTTTCCCACATAAACAAGAAACGCAGCCGGTCGCGCCAACGGCCTGCCTGCGCCGCCATCCAGGACACTGCAG
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| DNA Sequence for Gene |
>NQ02_RS02540
ATGAAACACGTCGTTTCCAGTGCGTTATTGCTCGGTCTCTCCTCGCTTTCCCTGGCCGCCCAGGCCGCTCCCATCGCCCTTGACCTTCCCGCCCAGCCCC TGGCCGCATCCCTCGAGCAATTGCAGGGCGCCAGCGGCCTGCGCATCCGTTTCGACCGCGCGGCCGTGGCCGACCGGCGCGCACCGGCCCTACGCGGCAC GCTGGAGCCAAGCGAGGCACTGCAGCGTCTGCTCGCAGGTTCCGGACTGAGCGGGGAGGTACGGGGCGGCGACGCCTGGGTCGAGGCCGCGGCGACAGGT GCCGGCATCGCCCCCGGCGACAGCGTCGACCTCGGCGCGCTCAGCGTGGTCGCCACCCAGGACCCGGCCACCGCCGCCATCACCGAAGACAGCGGCTCCT ACACCACGCGGGCGATGCGCACCTCGACCAAGCTGGCGATGTCGATCCGCGAGACCCCTCAGTCGGTCAGCGTGGTCACCCGCCAGCGCATGGACGACCA GGGCATGCGCGACCTCAACGACGCGGTGAAGGGCGTCACCGGCCTCACCGTGCAACAGTACGGGCCGGCCCGGGTGAAGTACGCGGCGCGCGGCTTCGAC GTCGACAACATCATGTACGACGGCCTGCCGACGAGCATTTCCACCTATACCCAGGACGTCATTTCCGCCGCCGACCTGGCCATGTTCGACCGCGTCGAAG TGGTGCGCGGCGCCACCGGACTGATGCAGGGCGCAGGCAACCCGGCGGCGGCGATCAACATGGTGCGCAAGCGTCCGACCCAGGACTTCCGCGCCTCCCT GCAAGGCAGCGTCGGCACCTGGGACCGCTATCGCAGCGAGGCCGACGTTTCCGGCCCGCTGAACAGCGAAGGAACCCTGCGCGGCCGCGCGGTGGTCGCC TACCAGAAAGGCAACAGCTTCCAGGACCACGTCAGCAGCGAACGCGGCGTGTTCTACGGGATCGCCGAAGCCGACCTGAGCCCGGACACCACCTTCGCCA TCGGCGCCTCGAACCAGAACGACAACCGCAACGACAACTGGGTAGGCCTGCCCAGCCCGCTGGGCGGCCGCCACCTGGACCTCAAGCGCTCGTCCTATTA CGGCGCCGACTGGTCCTACTGGGATACCGACACCACCCACCTGTTCAGCGACCTGACCCACCGCTTCGCCAACGGTTGGCAGATGAAGCTGGCCGCCGAC AAGCTGTGGGCGCGAATCAACATGCTCGGGCTGTACAACGACTGCTACTACTCGACCACCGGCTGCGCCAGCATGACCCAGAACCCCGGCGACTACAGCT ACACCGACGACCACGACAGCTATGACGCCTATGCCAACGGTCCCTTCCAGTTGCTCGGCCGCGAGCACGAGCTGGTGGTCGGCGCCAGCTATCGCCAGGA ACGCTTCGACGGCCACGGCGGCTGGGGCAGCCTGTTCAACAAGGACGGCACCCCCACCGGGCCGATGGACCCGACCCAGTGGGACCCGAGCTCGACTCTC AAGCCGAGGCTGAACACCAGCCTGTGGGGCATGAAGCTCGACCAGGAACAGAAAGGCGCCTACCTCACCACCCGGTTGAACCTCGCCGACCCGCTGAAAG TGATCCTCGGCGGGCGCCTGGACTGGTACAAGGCCGACGCCGATACCGACAGCTACAAGGTCACCCGCAACGTCACCCGCTATGCCGGGGTGATCTACGA CCTGAACCAGACCTACTCGGTCTACGCCAGCTATACCGACATCTTCAAGCCGCAGAGCAACTTCGACGCCGGCGGCGGCCTGCTCGACCCGATCACCGGC AAGAACTACGAGATCGGCCTGAAGGGCGAACACTTCGGCGGCGCGCTCAATTCGCAGATCGCGCTGTTCCAGATCGACCAGGAAAACCGCGCCACCGAGG ACGTCGGCGGCCCCTCGCCATGCCCCTTCAGCCCCACCTCGCGCTATTGCTCGCGCGCTTCGGGCAAGGTCCGCAGCCAGGGCGTCGACCTGGAGCTGAG CGGTGCGCTGAGCGACGACTGGCAGATGATGGCCGGCTATACCTACGTCGACGCCAAGTACAAGCACGACAGCAACAAGGCCAACGAGGGCAAGCCATTC GACGCGGCCAAGCCACGCCACCTGTTCAAGCTCGCCACCAGCTATACGCTACCCGGCGAACTGCACAAATGGCGCGTCGGCGGCGACCTGGCCACCCAGA GCAAGACCGAGGACAGCAGCACCGGTTTCCAGCAGGGCGGCTACACCGTGGTCAACGCCATGCTCGGCTACAAGGTCAACGAACGGATCGACACGCGGCT GAACTTCAACAACCTGTTCGACAAGTACTATTACAGCGGCATCGACTTCGGCAACCTCAACTACGGCGAGCCGCGCAACCTGATGTTCACGGTGAAGTAC TCGCTCTGA
BLASTN Search
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DIAMOND BLASTX Search (DIAMOND is faster than BLASTX)
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| DNA Sequence Downstream of Gene |
TCCCGGACCGCCGGCGTGCCTCCGCAGGCGCGGCGGCGGTGTCCGAACGGCCCTTCGAGGCGCCTCAGCAGGGCCGATAGCGGCGCTCGAACTCGCTCGC CAACTGCTCCAGCGTGACGCTCCCCAGGCGCTCCAGGAGCAACGCCTGCGCCGCCTCGAACGCCTCGCCGAGCGCTTCGTTGACCGCCTGCTCGACCAGG CATTCCGGATGATCGGTAGACAGGCCGATGGCGAAGATCGAGGACGCTCCCAGCGCCTGGTGGATATCCAGCAAGGTGATGTCCGCCAGCGGCTTGGCCA GCCGCCAACCGCCGCGATGGCCCTTCTCCGAACTCACGTAGCCTTCGTTCTTCAGCAGCGCCATGGTCCGTCGCACCACCACCGGGTTGGTGCCGAGCAT CTGCGCGATGGCTTCGGAAGTCGCCGGCCCTTCGTGGCGGGCCATATGGATCAGCACATGGAGCATGCGCGAGAGGCGGGTGTCGTTTCTCATGAACGGC
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| Amino Acid Sequence |
>ligand-gated channel
MKHVVSSALLLGLSSLSLAAQAAPIALDLPAQPLAASLEQLQGASGLRIRFDRAAVADRRAPALRGTLEPSEALQRLLAGSGLSGEVRGGDAWVEAAATG AGIAPGDSVDLGALSVVATQDPATAAITEDSGSYTTRAMRTSTKLAMSIRETPQSVSVVTRQRMDDQGMRDLNDAVKGVTGLTVQQYGPARVKYAARGFD VDNIMYDGLPTSISTYTQDVISAADLAMFDRVEVVRGATGLMQGAGNPAAAINMVRKRPTQDFRASLQGSVGTWDRYRSEADVSGPLNSEGTLRGRAVVA YQKGNSFQDHVSSERGVFYGIAEADLSPDTTFAIGASNQNDNRNDNWVGLPSPLGGRHLDLKRSSYYGADWSYWDTDTTHLFSDLTHRFANGWQMKLAAD KLWARINMLGLYNDCYYSTTGCASMTQNPGDYSYTDDHDSYDAYANGPFQLLGREHELVVGASYRQERFDGHGGWGSLFNKDGTPTGPMDPTQWDPSSTL KPRLNTSLWGMKLDQEQKGAYLTTRLNLADPLKVILGGRLDWYKADADTDSYKVTRNVTRYAGVIYDLNQTYSVYASYTDIFKPQSNFDAGGGLLDPITG KNYEIGLKGEHFGGALNSQIALFQIDQENRATEDVGGPSPCPFSPTSRYCSRASGKVRSQGVDLELSGALSDDWQMMAGYTYVDAKYKHDSNKANEGKPF DAAKPRHLFKLATSYTLPGELHKWRVGGDLATQSKTEDSSTGFQQGGYTVVNAMLGYKVNERIDTRLNFNNLFDKYYYSGIDFGNLNYGEPRNLMFTVKY SL
BLASTP |
DIAMOND BLASTP (DIAMOND is faster than BLASTP)
Search for conserved domains in this protein at NCBI CDD site
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