Pseudomonas aeruginosa DK2, PADK2_22735

Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown

Gene Ontology

Ontology Accession Term GO Evidence Evidence Ontology (ECO) Code Reference Comments
Molecular Function GO:0003700 DNA-binding transcription factor activity
ISM
Inferred from Sequence Model
Term mapped from: InterPro:PR00039
 ECO:0000259
match to InterPro signature evidence used in automatic assertion
Biological Process GO:0006355 regulation of transcription, DNA-templated
ISM
Inferred from Sequence Model
Term mapped from: InterPro:PR00039
 ECO:0000259
match to InterPro signature evidence used in automatic assertion

Functional Classifications Manually Assigned by PseudoCAP

DNA replication, recombination, modification and repair Other DK2 genes in this class

Functional Predictions from Interpro

Analysis Accession Description Interpro Accession Interpro Description Amino Acid Start Amino Acid Stop E-value
SUPERFAMILY SSF53850 Periplasmic binding protein-like II - - 84 289 2.71E-22
Pfam PF03466 LysR substrate binding domain IPR005119 LysR, substrate-binding 90 277 1.3E-14
NCBIfam TIGR03298 JCVI: ArgP/LysG family DNA-binding transcriptional regulator IPR017685 HTH-type transcriptional regulator ArgP 2 290 1.3E-112
Gene3D G3DSA:1.10.10.10 - IPR036388 Winged helix-like DNA-binding domain superfamily 1 76 3.9E-21
PRINTS PR00039 LysR bacterial regulatory protein HTH signature IPR000847 Transcription regulator HTH, LysR 30 40 1.9E-6
Hamap MF_00513 HTH-type transcriptional regulator ArgP [argP]. IPR023490 HTH-type transcriptional regulator ArgP, gammaproteobacteria 1 295 56.080299
SUPERFAMILY SSF46785 Winged helix DNA-binding domain IPR036390 Winged helix DNA-binding domain superfamily 1 110 3.18E-18
PANTHER PTHR30579 TRANSCRIPTIONAL REGULATOR - - 1 291 2.1E-79
Gene3D G3DSA:3.40.190.290 - - - 77 296 5.4E-69
PRINTS PR00039 LysR bacterial regulatory protein HTH signature IPR000847 Transcription regulator HTH, LysR 40 51 1.9E-6
PRINTS PR00039 LysR bacterial regulatory protein HTH signature IPR000847 Transcription regulator HTH, LysR 19 30 1.9E-6
FunFam G3DSA:1.10.10.10:FF:000061 HTH-type transcriptional regulator ArgP - - 1 76 2.6E-35
Pfam PF00126 Bacterial regulatory helix-turn-helix protein, lysR family IPR000847 Transcription regulator HTH, LysR 5 62 3.5E-16

Search for additional functional domains at the NCBI CDD database website. Go to this protein's amino acid sequence and follow the link.