Pseudomonas aeruginosa AZPAE12145, NQ06_RS28115

Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown

Sequence Data

Strain Pseudomonas aeruginosa strain AZPAE12145 AZPAE12145_contig_29, whole genome shotgun sequence. [Details]
DNA Sequence Upstream of Gene
CTATGCACCAATCGCTATCTGGCCGAGCGCCTGGGTGCCGGCACCGCGCTGGGCTTCGAACGGCCCGGGCCGGTCGCCGCCGCACGCCTGCGCAACGCGC CCAGCGCGCAGAGCCAGCCGCGCCTGGACGGCCAGTCGCGCTGGAGACTGGTCTCGCAGCTGACCCTCAACCACCTGTCGCTGGTGGAAGGCCCGCGCGC CCTCGAAGCCCTGCGGGAAATCCTCGCCCTGCACAACCTGCGCGACGACGCCAGCGTCCGCCGGCAGATAGAAGGGCTGAGGCAACTCGACTGCCAGCGG GTGGTGGCGCACGTCGGCGAGGATGCCTGGCGCGGCTGGCGCAATGGCCTGGAAATCCGCCTGCGACTCGATCCGCAACACTTCGTCGGCGCCAGCGGCG TGCTGTTCTCCGCCGTGCTGGCGCAGTTCTTCTCGCTGTATGCCACCGCCAACCGTTTCGTGCGCACGGTCCTGGTGGAAGCCGACAAGGAGGTGAAGAC
DNA Sequence for Gene
>NQ06_RS28115
ATGGCAACCCCAGGCCGGCTCGCCGCTCTCCCTCTGAGTCAGCGGCTGCGCCGCACGCCGCAGCGCTTCGAACTGTTGCAGGCGCTGCTGCTGCTCGAAC GCGAGCGTCCCCAGGCGTTGCCGCTGGGCACCGGCAACGCGCCGCGGGCGGAGGCCCTGCGCCTGCGCGGGCCGCTGTTGCCGCTGTTCGCCTCGAGCGA GGTGGAAAGCCTGCTCGACGACCCGCAGCAACCGGTGCTGTCCACCCCGGTGTTCGGCCTCGGCGGACCCGACGGCCCGTTGCCCTATGCCTACCAGGAA TGGCTGCAACAACGCGCCCGGCAGAAGGACCATGCCCCCGCCGAGTTCCTCGACCTGTTCCAGCACCGCCTGCTCAGCCTGCTCTACCGGGTGCTGCGCA AGCATCGCGTGGCGCTCGGTTTCGCGGTGCCGGCGGCGACCCCGGTGCAGGCGCAGCTACGCGCCCTCAGCGGCCTGTTGCCGAAAGCCCTGCAAGAGCG CCTGGCGCTGCCGGACAGCGCGGTACTGGCACGCACCGCGCTGTTCGCCGGCGGGCGTCGCTCCCTGGCCGGCTTCGCCGGCCTGGTGCGCCAGCATTTC GGCGTGGAGGCACGGCTGGACGCCTACCAGGGCGCCTGGAAGGAAATCCCCGCGGCCAGCCGCAGCCGGCTGCAACGCGGCGGACGCAACCTGCGCCTGG GTCGCGACGCCATAGCCGGCACGCGCACCTGGGACGAGCACGCCGGCATCGCCCTCAGTCTCGGTCCGCTGGATGCCCGCGAAGCCGCCCGCTTCTTCCC CGACGGCGACGCCCATGGCCAGTTGGCCAGCCTCGCCGCGCTGTACTTCGGCCCCGACCTGGATTGTCGCCTGAGCCTGCTGGTGAGCGGCGGCGCGCCG CTGCGCCTGGAGCGCGGTGCACCGCCCAGGCTGAGCTGGAACACCGGCCTGCGGCGCGTCGAAGACGGCCAGCGGCAGCGCATCGATCTCGACCTGCGGC AGCCGGAGGTAGCCTGA
BLASTN Search  |  DIAMOND BLASTX Search (DIAMOND is faster than BLASTX)
DNA Sequence Downstream of Gene
AATGGAACTCGCCGCCCTGATCGGCCGCCTCAACCCTGACTGTCGCCGCGCCCTGGAGCGCGCCGCGCAACGCTGCCTGCAACGCACCCATCATTACGTA GAGATCGAGCACCTGCTGCTGGAGCTGCTGGACATCGACGGCGGCGACTTCGCCTGCCTGCTGCCGCGCTTCGGCCTGGAGCGCGACGCCCTGGTCGCCG AGATCAACCTGTCGCTGGAGCTGTTCAAGGCCGGCAATACCCGCACTCCGGCGCTGTCCGCGCACACCATCGGCCTGCTCGAGGACGCCGTGGTCCACGC CAGCGTGCTCGGCCAGGCGCAGATCCGTTCCGGCCTGCTGCTGCTCGCCCTGCTCGACCGCGAGGAGCGCCGCGCCCTGCTGCTGAACAGCGCGTCGTCG CTACTGCGGATTCCCCACGAGGCCTTGCAGGCCAACCTGCTGGAGTGGATCCAGACCTCCCGCGAACAGCCGGCTGCGCCGAACCGCCCGGCGGCAGGCG
Amino Acid Sequence
>type VI secretion protein
MATPGRLAALPLSQRLRRTPQRFELLQALLLLERERPQALPLGTGNAPRAEALRLRGPLLPLFASSEVESLLDDPQQPVLSTPVFGLGGPDGPLPYAYQE WLQQRARQKDHAPAEFLDLFQHRLLSLLYRVLRKHRVALGFAVPAATPVQAQLRALSGLLPKALQERLALPDSAVLARTALFAGGRRSLAGFAGLVRQHF GVEARLDAYQGAWKEIPAASRSRLQRGGRNLRLGRDAIAGTRTWDEHAGIALSLGPLDAREAARFFPDGDAHGQLASLAALYFGPDLDCRLSLLVSGGAP LRLERGAPPRLSWNTGLRRVEDGQRQRIDLDLRQPEVA
BLASTP | DIAMOND BLASTP (DIAMOND is faster than BLASTP)
Search for conserved domains in this protein at NCBI CDD site