Pseudomonas aeruginosa AZPAE12146, NQ07_RS11090
Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
Sequence Data
| Strain | Pseudomonas aeruginosa strain AZPAE12146 AZPAE12146_contig_9, whole genome shotgun sequence. [Details] | |
| DNA Sequence Upstream of Gene |
CTCGACCAGACAAGACCATCCGGTCACTCTTAGACCTTCGTGTAGTAGTCTTGAAAAAACACTACAAAACGTTTGACGACGGATTTTTTCCAGAGCATGA TGGCCCCGCTCCCGCTAATCAGGGGCTCTGAAACGACGAGCTCCCGGTGCCTGCGCCGATACGCCCTCGGCCTCCACCGTGTTGATCTGCCCACAAGGCG GCTTGACGAGATTGCGACTGGAACGAAGTTGTCCTGAGGGACGGGGAAGCGTTTACGTATCAGCCAGATCGAAAGACTCGACAGCGAGTCGCCCACCGGC AACCACGAGCCGAACGGCACTTGATCCAGTCGAGAAGCACGGTCCGCGAACTGTTCGTCTCCACCCCCTCCTCGGCGTCATTCTTCGCCACGGTCATTCT CTCGCCATGCAGCGGTGAGCCACCCGCAAGACAACCTTCACCAGCAGGTTTTGAGTGGGTCAGTCGGTGCTCAACCAATACATTTCTTGAAGGATTGACC
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| DNA Sequence for Gene |
>NQ07_RS11090
ATGTCCGCATATCAGAACGAGATCAAGGCAATTGCCGCGCTGAAAGAGAAGAACGGCAGCAGCTGGAGCGCGATCAACCCCGAGTACGCAGCTCGCATGC GTATCCAGAACCGCTTCAAGACCGGCCTGGATATCGCCAAGTACACCGCGGCCATCATGCGCAAGGACATGGCCGAATACGATGCGGACTCCTCCGTCTA CACCCAGTCGCTGGGTTGCTGGCACGGCTTCATCGGGCAGCAGAAGCTGATCTCGATCAAGAAGCACCTGAAGACCACCAACAAGCGCTACCTCTACCTG TCCGGTTGGATGGTCGCCGCGCTGCGCTCCGACTTCGGCCCGCTGCCGGACCAGTCCATGCACGAGAAAACCGCGGTTTCCGGCCTGATCGAAGAGCTGT ACACCTTCCTGCGCCAGGCTGACGCCCGCGAGCTGGACCTGCTGTTCACCGGCCTGGACGCTGCCCGCGCCGCTGGCGACAAGGCCAAGGAAGCCGAGCT GCTGGCCCAGATCGACAACTTCGAAACCCACGTGGTGCCGATCATCGCCGACATCGACGCCGGCTTCGGCAACGCCGAGGCGACCTACCTGCTGGCCAAG AAGATGATCGAAGCCGGCGCCTGCTGCATCCAGATCGAGAACCAGGTGTCCGACGAGAAGCAGTGCGGCCACCAGGACGGCAAGGTCACCGTTCCGCACA TCGACTTCCTCGCCAAGATCAATGCCGTACGCTACGCCTTCCTCGAGCTGGGCGTGGACGATGGCGTGATCGTCGCCCGTACCGACTCCCTGGGCGCTGG CCTGACCAAGCAGATCGCCGTGACCAACGAGCCGGGCGACCTGGGCGACCTGTACAACTCCTTCCTGGATTGCGAAGAAATCTCCGAGGCCGAGCTGGGC AACGGCGACGTCGTGATCAAGCGCGAAGGCAAGCTGCTGCGTCCGAAGCGCCTGGCTTCCAACCTGTTCCAGTTCCGCAAGGGCACCGGCGAAGATCGCT GCGTCCTGGACTGCATCACCTCGCTGCAGAACGGCGCCGACCTGCTCTGGATCGAAACCGAGAAGCCGCACGTCGGCCAGATCAAGGCAATGGTCGATCG CATCCGCGAAGTGATTCCGAACGCCAAGCTGGTCTACAACAACAGCCCGTCCTTCAACTGGACCCTGAACTTCCGCCAGCAGGTGTTCGATGCGTTCGTC GCCGAAGGCAAGGACGTTTCCGCCTACGACCGCAACAAGCTGATGAGCGTCGAGTACGACGACACCGAGCTGGCCAAGGTCGCCGACGAGAAGATCCGCA CCTTCCAGCGCGATGGCTCGGCCCACGCCGGCATCTTCCACCACCTGATCACCCTGCCGACCTACCACACCGCCGCGCTGTCCACCGACAACCTGGCCAA GGGCTACTTCGCCGACGAAGGCATGCTGGCCTACGTGAAGGGCGTGCAGCGCCAGGAACTGCGCCAGGGCATCGCCTGCGTCAAGCACCAGAACATGGCG GGCTCCGACATCGGCGACAACCATAAAGAGTACTTCGCAGGCGAAGCCGCTCTGAAGGCCAGCGGCAAAGACAACACCATGAACCAGTTCCACTAA
BLASTN Search
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DIAMOND BLASTX Search (DIAMOND is faster than BLASTX)
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| DNA Sequence Downstream of Gene |
GGAACAGGGGCCAGCCGGGCAGCCACGATCTGCCCGGCCCGCCTCGCGAAAACCCCGGCTCCGGCCGGGGTTTTTCATTTCCGGATCATGGCAAAAGGCC TCGAGTGCCTGTCATCGTCCCGTCGCTTTCAGCGGTTAGCGTCAATGCTCCGTCGATCAGCCCACAAGGAGCACGTCCGTGAGCCTGGAGAAAAAAGATG CCATCCTGTTCGGTGATGGCGACGAGTTGCCCAGCAACCATTCGAACAACCCGCACATGAACGACCTGATCGCCGGCCTCGGCCGCCGCCAGGTCCTGGC CGGCGGCGCGGCGCTCGGCGCCCTCGCCTTCCTCGGCGTCGCGCTCCCCGCCAGCGCCGCTCCCGCCGAAGCGCAGGTGCCCGCCGCGGAAGGCCTGCGC GGCTTGCCTTTCAAACGCCGCAACCGCTTGCCCTTCGAAGCCATCGCCAGCGGCCGTGCCGATACCATCCGGGTGCCCGCCGGCTACAAGGCGACGCCCT
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| Amino Acid Sequence |
>isocitrate lyase
MSAYQNEIKAIAALKEKNGSSWSAINPEYAARMRIQNRFKTGLDIAKYTAAIMRKDMAEYDADSSVYTQSLGCWHGFIGQQKLISIKKHLKTTNKRYLYL SGWMVAALRSDFGPLPDQSMHEKTAVSGLIEELYTFLRQADARELDLLFTGLDAARAAGDKAKEAELLAQIDNFETHVVPIIADIDAGFGNAEATYLLAK KMIEAGACCIQIENQVSDEKQCGHQDGKVTVPHIDFLAKINAVRYAFLELGVDDGVIVARTDSLGAGLTKQIAVTNEPGDLGDLYNSFLDCEEISEAELG NGDVVIKREGKLLRPKRLASNLFQFRKGTGEDRCVLDCITSLQNGADLLWIETEKPHVGQIKAMVDRIREVIPNAKLVYNNSPSFNWTLNFRQQVFDAFV AEGKDVSAYDRNKLMSVEYDDTELAKVADEKIRTFQRDGSAHAGIFHHLITLPTYHTAALSTDNLAKGYFADEGMLAYVKGVQRQELRQGIACVKHQNMA GSDIGDNHKEYFAGEAALKASGKDNTMNQFH
BLASTP |
DIAMOND BLASTP (DIAMOND is faster than BLASTP)
Search for conserved domains in this protein at NCBI CDD site
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