Pseudomonas aeruginosa AZPAE12146, NQ07_RS27820

Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown

Sequence Data

Strain Pseudomonas aeruginosa strain AZPAE12146 AZPAE12146_contig_30, whole genome shotgun sequence. [Details]
DNA Sequence Upstream of Gene
CCCAGGGCAGCTCGGGTTTTCGCCGGACCCGCTACGAACTGCTGCTGGAACCGCAGTTGGCGCGCCTGGAGCTGTGCTGCAACTGGCGGATATTCCAGGA GAAGAGTGTTCCGGAGATTCTCCAGGCGCTGCTCAAGGAGCACCGGGTGCTCGACTACGAACAGCGCATCTACCACGAGCACCTGCCANNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
DNA Sequence for Gene
>NQ07_RS27820
ATCCCGGGCCACGCCTTTGCCTTGGAAGGTCATCCGCGTGCCGACTTCAACGCCTGGTGGCGGCCGGTGCGGGTGGTCCATCGCGGCACCCAGTATGCCG GCCAGGAGGAAGAGTCCGCCGACGCCCCTCTGGGGGTGAGCTACGACCTGCGCGCCGAACTGGTACCCGAGGACGTCGAATGGCGTCCCGCACCGCTGCC TCGGCCGCGTATCGATGGTCCGCAGATCGCGACGGTAGTCGGCCCGGCAGGGGAAGAGATCCATTGCGACGAGTGGGGACGGGTGAAGGTCCAGTTCCCC TGGGATCGCGAGGGACGTCACGATGAATTCAGTACCTGCTGGATACGGGTCGCGCAGAACTGGGCAGGTGCCGACTGGGGGCACATGGCGATCCCGCGGA TTGGCCAGGAGGTGATCGTCGATTACCTGGACGGCGACTGCGACCAGCCGATCGTCACCGGGCGCACCTACCGGGCGACCAACCGACCGCCCTACGCGCT GCCCGACCACAAGATCCTCAGCACCATCAAGAGCAAGGAGTACAAGGGCAGTCGGGCCAACGAGCTGCGCATCGACGACACCACGGCGCAGATCAGTGCG GCGCTGATGAGCGACCACGGTGCCAGCGCGCTGCACCTGGGCTACCTGACCCATCCCCGGCCCGAAGGCGGCAAGCCGCGCGGCGAGGGCTTCGAACTGC GCACCGACGAACATGGCGCGGTGCGTGCGGCCAAGGGGCTGCTGCTGAGCACCGAGGAGCAGCTCAGGGCCGGCGCCGGCCATCTCGACCGAGGCGTCGT GGTGCAGGTGCTGGAGGCCGCGCTGGAGCTGGCCCGCGAGCTGGGCGACTACGCCGGGGAGCACCAGGGCGTGGGGCACGACGCGGCGCCGCAGCAAACC CTCCAGGAAGCCGTGCGCGACCTCGGCCACGGCGCCAACGACGAGTCCGGCAAGAGCAACGGAGGCAAGCCGGCGATCGCCTTGAGCGGTCCGGCAGGGA TCGCCGCGGCGACGCCGGCGAGCCTGACCCTGGCCGCCGGCGAGCACGTCGACAGCGTGGCCCGGCAGAACCAGCAGGTGACCGCCGGGCAGAAGGTGGT GATCAACGCCGGCAGCGACATCGGCCTGTTCGCCCAGGGCGGCGAGCTACGCCAGATCACCCACCAGGGGCCGATGCTGCTGCAGGCGCAGAAGAACGAC ATCCGCCTGGAGGCCGAGCAGAGAGTGGAGGTCAGCGCCAGCCAGCAGCACGTGCTGGTCACCGCGAAGGAGCACATCACCCTGATGTGCGGCGGCGCCT ACCTGACCCTCAAGGGCGGCAACATCGAGCTGGGCATGCCCGGCAACTTCGTGGTCAAGGCGGCGAAGCACAGTCATGTCGGCGCGGCCAGCCTGGAAGC CGAGCTGCCGCAGTTCGAGGTGGGCGAGACGCAGCGGCGGTTCGTCCTCAAGCAACTGGACGGGCAGACGGCCATGCCCAACGTGCCCTATACCATCACC ATGGCCAACGGCGAGGTCATCGAGGGCGTCACCGACGCCGAAGGCGCTACCCAGCTGCTGCAGAAGGATGCGATGAACATCGCCAAGGTCGATATGAAAC ACACGAAATCGCCCGCCTCCGCAGTTGCCGGGATAGCAGCGGCGGTTGGCGCGGCGGTTGCAGTCGGCAAGCTCCTGAGTGGCCCCGACGCCGAGGCCGG ACGTGCTCTCAGCGAAGGGGAAATCAGCCTGGCGAAAGGCGTATTCGGCGATTCCATCGACTATTCCACGGTCCGCCTGCGCGACGAGGACTATGTCCCC TGGCAGGGCAAGGACTACGTGATGGCGCCGAACGGCCACATCTACTTCGGCGAGGAGTTGCGCGGCGTGGCGGACTGGAGCCTGGAGAGCCTGCAGCGCC AGGGTCTGTTCATTCACGAAATGACCCATGTCTGGCAGCACCAGCATGGCGTCAACGTCCTTCTGGTGGGGGCCTACCAGCAAGCCAGGCAGTTTCTCCT AGGCGACCAGTACGCCTACCGGTTGGAGCCGGGAAAGACGTTGAAGGACTACAACATCGAACAGCAGGGAGACATCGTTCGAGATTATTTCCTCGAGAAG AACGAGTTCGGGGAAGCCTCTGCGAACAGCAGGTTCGCTGGCGTACTGAAAAACTTCCCAACGGGATACTGA
BLASTN Search  |  DIAMOND BLASTX Search (DIAMOND is faster than BLASTX)
DNA Sequence Downstream of Gene
CCAATGAAATGCAAGACCTTGCTCATTGCCTGCCTGTTCGGCCTGGGAAGCGCCCAGGCCCTGGCCGTTTCCAAACTGCCACCGCAGATCCCGGTGCACG CCGGCTCCGGGCGCGTGACACTGGATCTACGCCCCTTGCTGGCGGAAACCAACGACGTCGAGATCACCCGTGTTTCGGTATGTCGGCGGGTCGGCAGCCA TTGCCAGGAAACGCTGTGGCGGATCGAGCTCCCGCCCGGGTGGCGTGCCGGGGAGATCGAGGTCTTCGGCGACTATCCCGGCTCCAGCGTGCTCCTGCGC CGGCCGGAGCGCTTGCAGCCAGATGGGAGCTACAACGCATTCATTCATTTCAACGAGCGTAGCCGTCGGCACCGGCAAACGGTTTCCAGCATTGCCGTCG AATTCTGCCTGGCCGGCGAACCTGGCAACTGGATGCTGCTCGACGAAGCGACCTGCCTGGCACGACGCAACGCCGAGGAGCGGCAAGGAGAGAAGCCATG
Amino Acid Sequence
>type IV secretion protein Rhs
MPGHAFALEGHPRADFNAWWRPVRVVHRGTQYAGQEEESADAPLGVSYDLRAELVPEDVEWRPAPLPRPRIDGPQIATVVGPAGEEIHCDEWGRVKVQFP WDREGRHDEFSTCWIRVAQNWAGADWGHMAIPRIGQEVIVDYLDGDCDQPIVTGRTYRATNRPPYALPDHKILSTIKSKEYKGSRANELRIDDTTAQISA ALMSDHGASALHLGYLTHPRPEGGKPRGEGFELRTDEHGAVRAAKGLLLSTEEQLRAGAGHLDRGVVVQVLEAALELARELGDYAGEHQGVGHDAAPQQT LQEAVRDLGHGANDESGKSNGGKPAIALSGPAGIAAATPASLTLAAGEHVDSVARQNQQVTAGQKVVINAGSDIGLFAQGGELRQITHQGPMLLQAQKND IRLEAEQRVEVSASQQHVLVTAKEHITLMCGGAYLTLKGGNIELGMPGNFVVKAAKHSHVGAASLEAELPQFEVGETQRRFVLKQLDGQTAMPNVPYTIT MANGEVIEGVTDAEGATQLLQKDAMNIAKVDMKHTKSPASAVAGIAAAVGAAVAVGKLLSGPDAEAGRALSEGEISLAKGVFGDSIDYSTVRLRDEDYVP WQGKDYVMAPNGHIYFGEELRGVADWSLESLQRQGLFIHEMTHVWQHQHGVNVLLVGAYQQARQFLLGDQYAYRLEPGKTLKDYNIEQQGDIVRDYFLEK NEFGEASANSRFAGVLKNFPTGY
BLASTP | DIAMOND BLASTP (DIAMOND is faster than BLASTP)
Search for conserved domains in this protein at NCBI CDD site